Browse Element(s) Details


Os.56026.1.A1_at

Description gb:AK109142.1
DB_XREF= gi:32994351
TID=Os.56026.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.56026 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-155-E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-155-E10, full insert sequence.
FL= gb:AK109142.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5020010/1133 kDa secretory protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50140OsAffx.24805.1.S1_s_at11/112+30625495..30626800ABA-induced protein, putative
LOC_Os02g50150OsAffx.24806.1.S1_at11/112+30630253..30632610Caleosin related protein
LOC_Os02g50150OsAffx.28165.1.S1_at1/112+30630253..30632610Caleosin related protein
LOC_Os02g50174OsAffx.12573.1.S1_s_at11/112+30636523..30648727Caleosin related protein, expressed
LOC_Os02g50174Os.9760.1.S1_at11/112+30636523..30648727Caleosin related protein, expressed
LOC_Os02g50174OsAffx.12573.1.S1_at11/112+30636523..30648727Caleosin related protein, expressed
LOC_Os02g50174OsAffx.26548.1.S1_at3/112+30636523..30648727Caleosin related protein, expressed
LOC_Os02g50200Os.56026.1.A1_at10/112+30649418..3065051633 kDa secretory protein, putative, expressed
LOC_Os02g50210Os.7229.1.S1_at10/112+30652557..30653352Erwinia induced protein 2, putative, expressed
LOC_Os02g50220OsAffx.24807.1.S1_at10/112+30655447..30658484expressed protein
LOC_Os02g50220Os.50196.2.S1_x_at1/112+30655447..30658484expressed protein
LOC_Os02g50230Os.39981.1.S1_at11/112+30663348..30667188Peptidase family M48 containing protein, expressed
LOC_Os02g50240Os.7909.1.S1_at11/112+30668911..30672790Glutamine synthetase root isozyme 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56026.1.A1_at--786--3891Chr02:30650238..30650262 (25 bp)
CTGGGCATCGCGTGTCCGGCAACCG
LOC_Os02g50200
Os.56026.1.A1_at--1021--10552Chr08:16459984..16460050 (25 bp)
TTCTTCACTTCCTTGGCCTATATAT
NONE
Os.56026.1.A1_at--194--10871Chr02:30650300..30650324 (25 bp)
TTGGCCTATATATTTGTACTCATGT
LOC_Os02g50200
Os.56026.1.A1_at--1039--3431Chr02:30650338..30650362 (25 bp)
CAGTTGCAGTATGATCAATGATCGT
LOC_Os02g50200
Os.56026.1.A1_at--1144--3191Chr02:30650353..30650377 (25 bp)
CAATGATCGTGAACTAGACTACTAG
LOC_Os02g50200
Os.56026.1.A1_at--936--8711Chr02:30650386..30650410 (25 bp)
TGTCTGTGTGCTTTATGCGTGGTAT
LOC_Os02g50200
Os.56026.1.A1_at--50--8751Chr02:30650410..30650434 (25 bp)
TGTAACCACTAATCAGCATATCTGC
LOC_Os02g50200
Os.56026.1.A1_at--1157--7391Chr02:30650439..30650463 (25 bp)
GTGATGCGATGCAGGTTTACTCCTT
LOC_Os02g50200
Os.56026.1.A1_at--935--3471Chr02:30650450..30650474 (25 bp)
CAGGTTTACTCCTTGTGCTTGAACA
LOC_Os02g50200
Os.56026.1.A1_at--21--9831Chr02:30650478..30650502 (25 bp)
TAAACTTGATGCTTTCTAACTTAAA
LOC_Os02g50200
Os.56026.1.A1_at--1146--9791Chr02:30650494..30650518 (25 bp)
TAACTTAAATGGACTTCTTATCAAG
NONE
Target Sequence 
CTGGGCATCGCGTGTCCGGCAACCGGTTCGTTCTCNCCGTCGCCGGCGGTTTCTTCACTTCCTTGGCCTATATATTTGTA
CTCATGTAGTTACTGAATTACAGTTGCAGTATGATCAATGATCGTGAACTAGACTACTAGAGTGCCTGTGTCTGTGTGCT
TTATGCGTGGTATGTAACCACTAATCAGCATATCTGCATATGTGATGCGATGCAGGTTTACTCCTTGTGCTTGAACAAAT
TAAACTTGATGCTTTCTAACTTAAATGGACTTCTTATCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56026.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis