Browse Element(s) Details


Os.7909.1.S1_at

Description gb:AK071969.1
DB_XREF= gi:32981992
TID=Os.7909.1
CNT=134
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.7909 (NCBI UniGene Cluster)
UG_TITLE=Shoot GS1 mRNA for cytosolic glutamine synthetase (EC 6.3.1.2) (clone lambda-GS28)
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013083D11, full insert sequence.
FL= gb:AB037595.1 gb:AK104987.2 gb:AK061157.1 gb:AK109397.2 gb:AK071969.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5024011/11Glutamine synthetase root isozyme 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50174OsAffx.12573.1.S1_s_at11/112+30636523..30648727Caleosin related protein, expressed
LOC_Os02g50174Os.9760.1.S1_at11/112+30636523..30648727Caleosin related protein, expressed
LOC_Os02g50174OsAffx.12573.1.S1_at11/112+30636523..30648727Caleosin related protein, expressed
LOC_Os02g50174OsAffx.26548.1.S1_at3/112+30636523..30648727Caleosin related protein, expressed
LOC_Os02g50200Os.56026.1.A1_at10/112+30649418..3065051633 kDa secretory protein, putative, expressed
LOC_Os02g50210Os.7229.1.S1_at10/112+30652557..30653352Erwinia induced protein 2, putative, expressed
LOC_Os02g50220OsAffx.24807.1.S1_at10/112+30655447..30658484expressed protein
LOC_Os02g50220Os.50196.2.S1_x_at1/112+30655447..30658484expressed protein
LOC_Os02g50230Os.39981.1.S1_at11/112+30663348..30667188Peptidase family M48 containing protein, expressed
LOC_Os02g50240Os.7909.1.S1_at11/112+30668911..30672790Glutamine synthetase root isozyme 3, putative, expressed
LOC_Os02g50250OsAffx.3025.1.S1_at11/112+30679458..30680309hypothetical protein
LOC_Os02g50260OsAffx.19972.1.S1_at3/112+30685344..30687619transposon protein, putative, unclassified
LOC_Os02g50260Os.38172.1.S1_x_at2/112+30685344..30687619transposon protein, putative, unclassified
LOC_Os02g50270Os.18106.1.S1_at11/112+30689482..30692532ankyrin repeat family protein, putative, expressed
LOC_Os02g50280Os.52130.1.S1_at11/112+30693189..30695272pentatricopeptide, putative, expressed
LOC_Os02g50290Os.49154.1.S1_at11/112+30696095..30697767Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006542biological_processglutamine biosynthesis
GO:0005829cellular_componentcytosol
GO:0004356molecular_functionglutamate-ammonia ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7909.1.S1_at--318--2811Chr02:30670147..30670171 (25 bp)
AAGTTGGCCCGTCTGTCGGCATTTC
LOC_Os02g50240
Os.7909.1.S1_at--678--4951Chr02:30670129..30670153 (25 bp)
GCATTTCTGCCGGTGATCAGGTGTG
LOC_Os02g50240
Os.7909.1.S1_at--87--6451Chr02:30670115..30670139 (25 bp)
GATCAGGTGTGGGTTGCTCGCTACA
LOC_Os02g50240
Os.7909.1.S1_at--160--7491Chr02:30670107..30670131 (25 bp)
GTGGGTTGCTCGCTACATTCTTGAG
LOC_Os02g50240
Os.7909.1.S1_at--552--6091Chr02:30669976..30670000 (25 bp)
GAGTCGTCGTCTCATTTGACCCCAA
LOC_Os02g50240
Os.7909.1.S1_at--54--7651Chr02:30669942..30669966 (25 bp)
GGGAGACTGGAACGGTGCTGGTGCT
LOC_Os02g50240
Os.7909.1.S1_at--515--9931Chr02:30669782..30669806 (25 bp)
TACGAGATCATCAAGTCCGCCATTG
LOC_Os02g50240
Os.7909.1.S1_at--56--3231Chr02:30669771..30669795 (25 bp)
CAAGTCCGCCATTGAGAAGCTCAAG
LOC_Os02g50240
Os.7909.1.S1_at--215--5931Chr02:30669422..30669446 (25 bp)
GAGCAGAACGGCAAGGGCTACTTCG
LOC_Os02g50240
Os.7909.1.S1_at--616--2871Chr02:30669410..30669434 (25 bp)
AAGGGCTACTTCGAGGATCGCCGGC
LOC_Os02g50240
Os.7909.1.S1_at--574--4051Chr02:30669234..30669258 (25 bp)
CGATCTGGTGAATTGCATTTGTGCT
LOC_Os02g50240
Target Sequence 
AAGTTGGCCCGTCTGTCGGCATTTCTGCCGGTGATCAGGTGTGGGTTGCTCGCTACATTCTTGAGAGGATCACCGAGATC
GCCGGAGTCGTCGTCTCATTTGACCCCAAGCCCATCCCGGGAGACTGGAACGGTGCTGGTGCTCACACCAACTACAGCAC
CAAGTCGATGAGGAACGATGGTGGCTACGAGATCATCAAGTCCGCCATTGAGAAGCTCAAGCTCAGGCACAAGGAGCACA
TCTCCGCCTACGGCGAGGGCAACGAGCGCCGGCTCACCGGCAGGCACGAGACCGCCGACATCAACACCTTCAGCTGGGGA
GTTGCCAACCGCGGCGCCTCGGTCCGCGTCGGCCGGGAGACGGAGCAGAACGGCAAGGGCTACTTCGAGGATCGCCGGCC
GGCGTCCAACATGGACCCTTACNTCGTCACCTCCATGATCGCCGAGACCACCATCATCTGGAAGCCCTGAAGCGGCTTCT
TGACGCCACGACATCCTCGTCATCGTCCTCCCCAGCTCGCCGTGTCGCTCCGGTTGCTCCATTGATCGGACGATCTGGTG
AATTGCATTTGTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7909.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis