Browse Element(s) Details


Os.52130.1.S1_at

Description gb:AK065002.1
DB_XREF= gi:32975020
TID=Os.52130.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52130 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001E05, full insert sequence.
FL= gb:AK065002.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5028011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50240Os.7909.1.S1_at11/112+30668911..30672790Glutamine synthetase root isozyme 3, putative, expressed
LOC_Os02g50250OsAffx.3025.1.S1_at11/112+30679458..30680309hypothetical protein
LOC_Os02g50260OsAffx.19972.1.S1_at3/112+30685344..30687619transposon protein, putative, unclassified
LOC_Os02g50260Os.38172.1.S1_x_at2/112+30685344..30687619transposon protein, putative, unclassified
LOC_Os02g50270Os.18106.1.S1_at11/112+30689482..30692532ankyrin repeat family protein, putative, expressed
LOC_Os02g50280Os.52130.1.S1_at11/112+30693189..30695272pentatricopeptide, putative, expressed
LOC_Os02g50290Os.49154.1.S1_at11/112+30696095..30697767Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g50300NANA2+30699155..30699565expressed protein
LOC_Os02g50310NANA2+30700973..30702611BED zinc finger family protein
LOC_Os02g50320Os.47336.1.S1_at11/112+30714987..30720585expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52130.1.S1_at--1131--4791Chr02:30694737..30694761 (25 bp)
GCTCGGCTACTATTTCTTCGGATGA
LOC_Os02g50280
Os.52130.1.S1_at--155--10211Chr02:30694775..30694799 (25 bp)
TATTTCCTGGAATGCCCTACTTTCA
LOC_Os02g50280
Os.52130.1.S1_at--776--4291Chr02:30694790..30694814 (25 bp)
CCTACTTTCAGGTTATGCAGCAGAT
LOC_Os02g50280
Os.52130.1.S1_at--1106--6231Chr02:30694812..30694836 (25 bp)
GATGGACAGCCAGTTGCAACGATAA
LOC_Os02g50280
Os.52130.1.S1_at--502--5891Chr02:30694854..30694878 (25 bp)
GAGCTGGCATGCATTAGGCCTGACA
LOC_Os02g50280
Os.52130.1.S1_at--758--3271Chr02:30694877..30694901 (25 bp)
CAAATACACTTTGGCAGGGCTTTTA
LOC_Os02g50280
Os.52130.1.S1_at--314--5011Chr02:30694890..30694914 (25 bp)
GCAGGGCTTTTAAGCCTTTGCCGGT
LOC_Os02g50280
Os.52130.1.S1_at--115--4491Chr02:30694909..30694933 (25 bp)
GCCGGTACCAAGGACTATTGCATTA
LOC_Os02g50280
Os.52130.1.S1_at--649--5291Chr02:30694936..30694960 (25 bp)
GAAGGCAGATACACGCTCATCTCAT
LOC_Os02g50280
Os.52130.1.S1_at--759--10171Chr02:30695015..30695039 (25 bp)
TATCAAGTGCATGCGTCAGCAGGAT
LOC_Os02g50280
Os.52130.1.S1_at--586--331Chr02:30695176..30695200 (25 bp)
ATACTTTTGTCTTCCTTGTGGATAC
LOC_Os02g50280
Target Sequence 
GCTCGGCTACTATTTCTTCGGATGAATGAGAGAAACCTTATTTCCTGGAATGCCCTACTTTCAGGTTATGCAGCAGATGG
ACAGCCAGTTGCAACGATAAATATTTACCGCCAAATGGAGCTGGCATGCATTAGGCCTGACAAATACACTTTGGCAGGGC
TTTTAAGCCTTTGCCGGTACCAAGGACTATTGCATTATGGAAGGCAGATACACGCTCATCTCATCAAGATGGGTTCTGAA
ATGAACGTGGTAATGCAAACTATACTTGTTCATATGTATATCAAGTGCATGCGTCAGCAGGATGCTGAAAATGTTTGTAT
AATGATCGAAGAAAGGAATTCATATGTGCTTGATGCATTTTCAAAGGTCTATGGAGATGACTACTTGATCTGAAGAAAAG
AAAATATCTCATTTTACACTGGAGTTAGAATGTATGGGAATACTTTTGTCTTCCTTGTGGATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52130.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis