Browse Element(s) Details


Os.47336.1.S1_at

Description gb:AK102381.1
DB_XREF= gi:32987590
TID=Os.47336.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.47336 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033092B15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033092B15, full insert sequence.
FL= gb:AK102381.1 gb:AK063849.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5032011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50270Os.18106.1.S1_at11/112+30689482..30692532ankyrin repeat family protein, putative, expressed
LOC_Os02g50280Os.52130.1.S1_at11/112+30693189..30695272pentatricopeptide, putative, expressed
LOC_Os02g50290Os.49154.1.S1_at11/112+30696095..30697767Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g50300NANA2+30699155..30699565expressed protein
LOC_Os02g50310NANA2+30700973..30702611BED zinc finger family protein
LOC_Os02g50320Os.47336.1.S1_at11/112+30714987..30720585expressed protein
LOC_Os02g50330OsAffx.12575.1.S1_at11/112+30723201..30730508RNA-directed RNA polymerase 2, putative, expressed
LOC_Os02g50330Os.54038.1.S1_at10/112+30723201..30730508RNA-directed RNA polymerase 2, putative, expressed
LOC_Os02g50340Os.49577.1.S1_at11/112+30730821..30737755MAC/Perforin domain containing protein, expressed
LOC_Os02g50340OsAffx.20484.1.S1_x_at1/112+30730821..30737755MAC/Perforin domain containing protein, expressed
LOC_Os02g50340OsAffx.20484.1.S1_at1/112+30730821..30737755MAC/Perforin domain containing protein, expressed
LOC_Os02g50350Os.4862.1.S1_at11/112+30739743..30743502Dihydroorotate dehydrogenase family protein, expressed
LOC_Os02g50360Os.15647.1.S1_at11/112+30744715..30750643nicastrin, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0007010biological_processcytoskeleton organization and biogenesis
GO:0005874cellular_componentmicrotubule
GO:0010005cellular_componentcortical microtubule (sensu Viridiplantae)
GO:0008017molecular_functionmicrotubule binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47336.1.S1_at--928--8211Chr02:30719505..30719529 (25 bp)
GGCTAAGCGGCCTGGAAATTTCAAA
LOC_Os02g50320
Os.47336.1.S1_at--618--2311Chr02:30719527..30719551 (25 bp)
AAAGGACCTGGAACCACTTCTCAGG
LOC_Os02g50320
Os.47336.1.S1_at--184--10591Chr02:30719544..30719564 (21 bp)
TTCTCAGGCGCCTCATGGAAGCAGA
LOC_Os02g50320
Os.47336.1.S1_at--247--6411Chr02:30720140..30720164 (25 bp)
GATAGTTTCGGATTTCCCTTTGTAT
LOC_Os02g50320
Os.47336.1.S1_at--824--6691Chr02:30720167..30720191 (25 bp)
GTTCCTCTGTTCGTATTAATTTTGT
LOC_Os02g50320
Os.47336.1.S1_at--81--1311Chr02:30720206..30720230 (25 bp)
AGATGACCCTGCGACACCTAGATTG
LOC_Os02g50320
Os.47336.1.S1_at--1038--2331Chr02:30720234..30720258 (25 bp)
AAAGAGTAGGCTTGCATCTGACATC
LOC_Os02g50320
Os.47336.1.S1_at--534--1831Chr02:30720313..30720337 (25 bp)
ACGCTCCCATTTTGTCAAGGCAGTG
LOC_Os02g50320
Os.47336.1.S1_at--223--10731Chr02:30720402..30720426 (25 bp)
TTGCTTTTGCTTGTCAGGGTTGTGA
LOC_Os02g50320
Os.47336.1.S1_at--142--531Chr02:30720437..30720461 (25 bp)
ATCGCAATATATTAGGGTCACCCTC
LOC_Os02g50320
Os.47336.1.S1_at--887--6511Chr02:30720535..30720559 (25 bp)
GATATTTTGTTTCAACCTCGAGCTG
LOC_Os02g50320
Target Sequence 
GGCTAAGCGGCCTGGAAATTTCAAAGGACCTGGAACCACTTCTCAGGCGCCTCATGGAAGCAGANATGCACCACGGGGTG
GNTTGACTCGGAACCTTCAATAACATACCTCTNACACCAGTCAGCATGAATTTCTTCGATAGTTTCGGATTTCCCTTTGT
ATTTGTTCCTCTGTTCGTATTAATTTTGTGATTGAGATAGCACAGATGACCCTGCGACACCTAGATTGGGGAAAGAGTAG
GCTTGCATCTGACATCGNCTTTGCTGTAATGTAGTGAAGNTAATCCTTCGGTAAGGTTTAACCTTGCGGCACGCTCCCAT
TTTGTCAAGGCAGTGCACGTTGTGGTTGTATAGGCTGGAGGACCTTGNCTTCTTCCCTTCTGTAATTTAGATAGTGTGTT
TGCTTTTGCTTGTCAGGGTTGTGAATATATTATTATCGCAATATATTAGGGTCACCCTCTCCCGCTCTATTTGAGCTTGG
TTGGGCTGTAATTGATTTCTCGTGTTTAACTGATGTAGCACAATTAACTCTTGATATTTTGTTTCAACCTCGAGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47336.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis