Browse Element(s) Details


Os.15647.1.S1_at

Description gb:AK065166.1
DB_XREF= gi:32975184
TID=Os.15647.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.15647 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002C12, full insert sequence.
FL= gb:AK065166.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5036011/11nicastrin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50320Os.47336.1.S1_at11/112+30714987..30720585expressed protein
LOC_Os02g50330OsAffx.12575.1.S1_at11/112+30723201..30730508RNA-directed RNA polymerase 2, putative, expressed
LOC_Os02g50330Os.54038.1.S1_at10/112+30723201..30730508RNA-directed RNA polymerase 2, putative, expressed
LOC_Os02g50340Os.49577.1.S1_at11/112+30730821..30737755MAC/Perforin domain containing protein, expressed
LOC_Os02g50340OsAffx.20484.1.S1_x_at1/112+30730821..30737755MAC/Perforin domain containing protein, expressed
LOC_Os02g50340OsAffx.20484.1.S1_at1/112+30730821..30737755MAC/Perforin domain containing protein, expressed
LOC_Os02g50350Os.4862.1.S1_at11/112+30739743..30743502Dihydroorotate dehydrogenase family protein, expressed
LOC_Os02g50360Os.15647.1.S1_at11/112+30744715..30750643nicastrin, putative, expressed
LOC_Os02g50370Os.25200.1.S1_at10/112+30750806..30756896Helicase associated domain family protein, expressed
LOC_Os02g50380OsAffx.9996.1.S1_x_at1/112+30763455..30763916retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g50390OsAffx.24809.1.S1_x_at11/112+30770123..30770659hypothetical protein
LOC_Os02g50390OsAffx.24809.1.S1_at11/112+30770123..30770659hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15647.1.S1_at--790--511Chr02:30745289..30745313 (25 bp)
ATCGTTGGCAGATCATACATTTCAA
LOC_Os02g50360
Os.15647.1.S1_at--105--3551Chr02:30745182..30745206 (25 bp)
CATCTCTGTAAGGTGCTCTGGGAAT
LOC_Os02g50360
Os.15647.1.S1_at--1025--2351Chr02:30745053..30745077 (25 bp)
AAAGCCATGTGGAGCCTTCCAGCTA
LOC_Os02g50360
Os.15647.1.S1_at--504--8051Chr02:30745025..30745049 (25 bp)
GGAGATGTGATCCTACTACATGATA
LOC_Os02g50360
Os.15647.1.S1_at--966--671Chr02:30744999..30745023 (25 bp)
ATGACACCGACCTACAGGCTGTTGT
LOC_Os02g50360
Os.15647.1.S1_at--358--3911Chr02:30744957..30744981 (25 bp)
CTGGATCTGCTTGGCTGATTGGCTC
LOC_Os02g50360
Os.15647.1.S1_at--402--6611Chr02:30744941..30744965 (25 bp)
GATTGGCTCTGCATTGGTAGGTATA
LOC_Os02g50360
Os.15647.1.S1_at--121--4731Chr02:30744869..30744893 (25 bp)
GCTGGTTATGCACGTATCATCTTTG
LOC_Os02g50360
Os.15647.1.S1_at--787--1131Chr02:30744820..30744844 (25 bp)
AGTCCTATTTTCCTACTGTGTTGGG
LOC_Os02g50360
Os.15647.1.S1_at--447--6791Chr02:30744776..30744799 (24 bp)
GTTTACGGAACCTTATCGATATCAA
LOC_Os02g50360
Os.15647.1.S1_at--121--7091Chr02:30744750..30744774 (25 bp)
GTCAAGAACTGTCCCTATACAATTT
LOC_Os02g50360
Target Sequence 
ATCGTTGGCAGATCATACATTTCAAAGATCATAAAGCGGGACTGAAACATCATCCATTCCCTCCATTATTTCTGAGACCT
TGGNCCATCAGATCCTACCACCAAAGCCATCTCTGTAAGGTGCTCTGGGAATTTTGAGAGTTGGAACAGAACTAATAGTC
TAACACATGAATTAAGTCGGCAAATCTTAGATGCAATGTGGCACATGGCGATAGGGAGAGGATTTGTAAAACTACNAAAA
GCCATGTGGAGCCTTCCAGCTAGAAGGAGATGTGATCCTACTACATGATACATGACACCGACCTACAGGCTGTTGTGATT
TGTACTGATGTTNCTGGATCTGCTTGGCTGATTGGCTCTGCATTGGTAGGTATAGGTAGATGGATGATGCCCCTCTGGGA
GGATGTATGCTGTGGATTAGTGCTGGTTATGCACGTATCATCTTTGAGTTTTGGCTGNTGTACGTCTCTCCAGTCCTATT
TTCCTACTGTGTTGGGACCAGTTGAGTATTGTGCTGGTTTACGGAACCTTATCGATATCAAGTCAAGAACTGTCCCTATA
CAATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15647.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis