Browse Element(s) Details


Os.25200.1.S1_at

Description gb:AK121498.1
DB_XREF= gi:37991121
TID=Os.25200.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.25200 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033009M20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033009M20, full insert sequence.
FL= gb:AK121498.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5037010/11Helicase associated domain family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50330OsAffx.12575.1.S1_at11/112+30723201..30730508RNA-directed RNA polymerase 2, putative, expressed
LOC_Os02g50330Os.54038.1.S1_at10/112+30723201..30730508RNA-directed RNA polymerase 2, putative, expressed
LOC_Os02g50340Os.49577.1.S1_at11/112+30730821..30737755MAC/Perforin domain containing protein, expressed
LOC_Os02g50340OsAffx.20484.1.S1_x_at1/112+30730821..30737755MAC/Perforin domain containing protein, expressed
LOC_Os02g50340OsAffx.20484.1.S1_at1/112+30730821..30737755MAC/Perforin domain containing protein, expressed
LOC_Os02g50350Os.4862.1.S1_at11/112+30739743..30743502Dihydroorotate dehydrogenase family protein, expressed
LOC_Os02g50360Os.15647.1.S1_at11/112+30744715..30750643nicastrin, putative, expressed
LOC_Os02g50370Os.25200.1.S1_at10/112+30750806..30756896Helicase associated domain family protein, expressed
LOC_Os02g50380OsAffx.9996.1.S1_x_at1/112+30763455..30763916retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g50390OsAffx.24809.1.S1_x_at11/112+30770123..30770659hypothetical protein
LOC_Os02g50390OsAffx.24809.1.S1_at11/112+30770123..30770659hypothetical protein
LOC_Os02g50400OsAffx.24809.1.S1_x_at11/112+30776055..30776285hypothetical protein
LOC_Os02g50400OsAffx.24809.1.S1_at11/112+30776055..30776285hypothetical protein
LOC_Os02g50410OsAffx.3026.1.S1_at11/112+30779781..30782367expressed protein
LOC_Os02g50410Os.29043.1.S1_at2/112+30779781..30782367expressed protein
LOC_Os02g50410OsAffx.28705.1.S1_at1/112+30779781..30782367expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0003723molecular_functionRNA binding
GO:0003724molecular_functionRNA helicase activity
GO:0004004molecular_functionATP-dependent RNA helicase activity
GO:0004386molecular_functionhelicase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25200.1.S1_at--883--1071Chr02:30756035..30756059 (25 bp)
AGGGCGATGAACTTTTCCCAAAGAG
LOC_Os02g50370
Os.25200.1.S1_at--1035--5391Chr02:30756116..30756140 (25 bp)
GAAGCTTCTTACTAGGTGGAGACAT
LOC_Os02g50370
Os.25200.1.S1_at--236--5991Chr02:30756134..30756423 (25 bp)
GAGACATCTTTGACAGCATCCACTT
LOC_Os02g50370
Os.25200.1.S1_at--992--10491Chr02:30756422..30756446 (25 bp)
TTAAGCTGAGAACCTCTGTGCCCAA
LOC_Os02g50370
Os.25200.1.S1_at--985--3691Chr02:30756437..30756461 (25 bp)
CTGTGCCCAAATCCTGGAAACCTGA
LOC_Os02g50370
Os.25200.1.S1_at--642--4391Chr02:30756480..30756504 (25 bp)
GCCAAGTTCGCCAACTGGTATCAGT
LOC_Os02g50370
Os.25200.1.S1_at--962--7851Chr02:30756496..30756520 (25 bp)
GGTATCAGTGCAGCCATGACATATT
LOC_Os02g50370
Os.25200.1.S1_at--728--8571NONE
TGGTTCATTTTACCTCACCATATGA
NONE
Os.25200.1.S1_at--820--251Chr02:30756676..30756700 (25 bp)
ATATGAACGAGTCTCTTTGACCATG
LOC_Os02g50370
Os.25200.1.S1_at--851--7051Chr02:30756739..30756763 (25 bp)
GTAACCAGTTACCACAGCATGATTG
LOC_Os02g50370
Os.25200.1.S1_at--593--811Chr02:30756859..30756883 (25 bp)
ATGGTGGCAGAAGTTGCCCCATTTT
LOC_Os02g50370
Target Sequence 
AGGGCGATGAACTTTTCCCAAAGAGGTACAAGAAAGTTAAAGGTAATCAATTCTAGAAGATTACAGTGCAATTGCTTGAC
AGAAGCTTCTTACTAGGTGGAGACATCTTTGACAGCATCCACTTAAGCTGAGAACCTCTGTGCCCAAATCCTGGAAACCT
GAGAAATAGATGATGGCTTCGCCAAGTTCGCCAACTGGTATCAGTGCAGCCATGACATATTTGCATTGACTGCAAATATG
CAATCATGGGATTGACCACTAATATTTCAGTAGCAGAAACAAAGAAACAGGGATAGCATGTAATCTTTGATAGATAGTGC
CGTGGAAGGATATTGTAGACATTCGTCGGATGGGTAATGGTTCATTTTACCTCACCATATGAACGAGTCTCTTTGACCAT
GNGCAGTTTTCTCTCTAGCAGTTGCAGATACAGATGGCAGTAACCAGTTACCACAGCATGATTGTTCTACAGTAATTTTT
GTAAGCAACTGCTAGAATATTAATGATAATTATGGCACAGTAATTTTTGTAAGCAACTGCAAGAATATCAATGGTAATTA
TGGTGGCAGAAGTTGCCCCATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25200.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis