Browse Element(s) Details


OsAffx.28705.1.S1_at

Description tigr:9635.m03143
TID=OsAffx.28705.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g224702/11transposon protein, putative, unclassified
LOC_Os02g504101/11expressed protein
LOC_Os01g589801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g22420OsAffx.31869.5.S1_x_at6/1112+12657671..12658603retrotransposon protein, putative, unclassified
LOC_Os12g22420OsAffx.31869.4.S1_x_at2/1112+12657671..12658603retrotransposon protein, putative, unclassified
LOC_Os12g22420OsAffx.31869.2.S1_at1/1112+12657671..12658603retrotransposon protein, putative, unclassified
LOC_Os12g22420OsAffx.31869.4.S1_at1/1112+12657671..12658603retrotransposon protein, putative, unclassified
LOC_Os12g22430OsAffx.31869.5.S1_x_at6/1112+12662875..12663807retrotransposon protein, putative, unclassified
LOC_Os12g22430OsAffx.31869.4.S1_x_at2/1112+12662875..12663807retrotransposon protein, putative, unclassified
LOC_Os12g22430OsAffx.31869.4.S1_at1/1112+12662875..12663807retrotransposon protein, putative, unclassified
LOC_Os12g22440OsAffx.22699.1.S1_x_at1/1112+12667776..12669335retrotransposon protein, putative, unclassified
LOC_Os12g22450OsAffx.19776.1.S1_at10/1112+12670248..12672162hypothetical protein
LOC_Os12g22450OsAffx.8469.1.S1_x_at2/1112+12670248..12672162hypothetical protein
LOC_Os12g22450OsAffx.8847.1.S1_x_at1/1112+12670248..12672162hypothetical protein
LOC_Os12g22460OsAffx.7657.1.S1_x_at11/1112+12674119..12674397hypothetical protein
LOC_Os12g22460OsAffx.7657.1.S1_at11/1112+12674119..12674397hypothetical protein
LOC_Os12g22470Os.27639.1.S1_x_at3/1112+12677469..12681434transposon protein, putative, unclassified
LOC_Os12g22470OsAffx.28705.1.S1_at2/1112+12677469..12681434transposon protein, putative, unclassified
LOC_Os12g22470OsAffx.1746.1.S1_at1/1112+12677469..12681434transposon protein, putative, unclassified
LOC_Os12g22470Os.29043.1.S1_at1/1112+12677469..12681434transposon protein, putative, unclassified
LOC_Os12g22480NANA12+12682522..12683448transposon protein, putative, unclassified
LOC_Os12g22490Os.10626.4.A1_s_at11/1112+12692005..12692436hypothetical protein
LOC_Os12g22490Os.40531.1.A1_x_at3/1112+12692005..12692436hypothetical protein
LOC_Os12g22500Os.51370.1.S1_x_at11/1112+12694169..12695021expressed protein
LOC_Os12g22500Os.51370.1.S1_at11/1112+12694169..12695021expressed protein
LOC_Os12g22500Os.52249.2.S1_x_at1/1112+12694169..12695021expressed protein
LOC_Os12g22510OsAffx.3812.1.S1_x_at4/1112+12704724..12708662retrotransposon protein, putative, unclassified
LOC_Os12g22510OsAffx.22699.1.S1_x_at2/1112+12704724..12708662retrotransposon protein, putative, unclassified
LOC_Os12g22510OsAffx.3812.1.S1_at2/1112+12704724..12708662retrotransposon protein, putative, unclassified
LOC_Os12g22510OsAffx.18275.1.S1_x_at1/1112+12704724..12708662retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28705.1.S1_at--667--7411Chr07:19040368..19040392 (25 bp)
GTGATTCTCACCCACGCGACGCGGT
NONE
OsAffx.28705.1.S1_at--550--4611Chr07:19040383..19040407 (25 bp)
GCGACGCGGTCGAAGCCTTCAACGC
NONE
OsAffx.28705.1.S1_at--738--4671Chr07:19040569..19040593 (25 bp)
GCGGAGGTCCCAACATTCGCGGAGT
NONE
OsAffx.28705.1.S1_at--1124--7751Chr07:19040574..19040598 (25 bp)
GGTCCCAACATTCGCGGAGTTCTCG
NONE
OsAffx.28705.1.S1_at--313--9351Chr07:19040630..19040654 (25 bp)
TCGCGGCGTCGAACATTGTGTCAGA
NONE
OsAffx.28705.1.S1_at--831--9351Chr07:19040638..19040662 (25 bp)
TCGAACATTGTGTCAGAGAGCGGCG
NONE
OsAffx.28705.1.S1_at--1138--8371Chr07:19040659..19040683 (25 bp)
GGCGAGAAGGCGTCCAACCTGGTCT
NONE
OsAffx.28705.1.S1_at--16--2931Chr07:19040665..19040689 (25 bp)
AAGGCGTCCAACCTGGTCTACAGGG
NONE
OsAffx.28705.1.S1_at--544--3278Chr12:12677604..12677623 (20 bp)
CAACAGGATGCCCAGCTATATCTAG
LOC_Os12g22470
OsAffx.28705.1.S1_at--673--63516Chr12:12677605..12677629 (25 bp)
GATGCCCAGCTATATCTAGTAGGAA
LOC_Os12g22470
OsAffx.28705.1.S1_at--689--100512Chr12:25355386..25355475 (25 bp)
TAGTAGGAATCACCTGATACCTGAT
NONE
Target Sequence 
GTGATTCTCACCCACGCGACGCGGTCGAAGCCTTCAACGCGCACCAGGCCTCCTCTGTAGTGCCACACCTGCCCCCCGCT
GCCGCCGTCGCGCTCATCCCTGTCGCCGCCGCCGTCGCGCCCACGCCGCCCGTCTTTCACCCTCAACACGCACCAGGCCT
CCTTTGCGGCGCCGTCGGCTCAGGCTCGGCCTACCGTGGGGGCGGAGGTCCCAACATTCGCGGAGTTCTCGCAGGCAGAG
CTTCGGGCTGCCATGGGTGGGTTCGCGGCGTCGAACATTGTGTCAGAGAGCGGCGAGAAGGCGTCCAACCTGGTCTACAG
GGGACGGCTGCAGGGGGCTGGCCGCGCCGTCGGAATGCTCCTCCCCCAACAGGATGCCCAGCTATATCTAGTAGGAATCA
CCTGATACCTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28705.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis