Browse Element(s) Details


Os.4862.1.S1_at

Description gb:AK065229.1
DB_XREF= gi:32975247
TID=Os.4862.1
CNT=28
FEA=FLmRNA
TIER=FL+Stack
STK=12
UG=Os.4862 (NCBI UniGene Cluster)
UG_TITLE=Putative dihydroorotate dehydrogenase mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002H08, full insert sequence.
FL= gb:AK065229.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5035011/11Dihydroorotate dehydrogenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50320Os.47336.1.S1_at11/112+30714987..30720585expressed protein
LOC_Os02g50330OsAffx.12575.1.S1_at11/112+30723201..30730508RNA-directed RNA polymerase 2, putative, expressed
LOC_Os02g50330Os.54038.1.S1_at10/112+30723201..30730508RNA-directed RNA polymerase 2, putative, expressed
LOC_Os02g50340Os.49577.1.S1_at11/112+30730821..30737755MAC/Perforin domain containing protein, expressed
LOC_Os02g50340OsAffx.20484.1.S1_x_at1/112+30730821..30737755MAC/Perforin domain containing protein, expressed
LOC_Os02g50340OsAffx.20484.1.S1_at1/112+30730821..30737755MAC/Perforin domain containing protein, expressed
LOC_Os02g50350Os.4862.1.S1_at11/112+30739743..30743502Dihydroorotate dehydrogenase family protein, expressed
LOC_Os02g50360Os.15647.1.S1_at11/112+30744715..30750643nicastrin, putative, expressed
LOC_Os02g50370Os.25200.1.S1_at10/112+30750806..30756896Helicase associated domain family protein, expressed
LOC_Os02g50380OsAffx.9996.1.S1_x_at1/112+30763455..30763916retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006207biological_process'de novo' pyrimidine base biosynthesis
GO:0016627molecular_functionoxidoreductase activity, acting on the CH-CH group of donors
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4862.1.S1_at--800--8651Chr02:30741384..30741503 (25 bp)
TGTGGAGGGTTATTCCACGCCTGGA
LOC_Os02g50350
Os.4862.1.S1_at--103--931Chr02:30741360..30741384 (25 bp)
AGGCTATTCTGCGAGAGCCGTGCAC
LOC_Os02g50350
Os.4862.1.S1_at--149--9031Chr02:30741340..30741364 (25 bp)
TGCACCCTATAGCACTTGCGAAAGT
LOC_Os02g50350
Os.4862.1.S1_at--947--10271Chr02:30741284..30741308 (25 bp)
TTTGCTGATGGACAGTCACTCTCTG
LOC_Os02g50350
Os.4862.1.S1_at--469--1171Chr02:30741271..30741295 (25 bp)
AGTCACTCTCTGCTATTGGAGGCGT
LOC_Os02g50350
Os.4862.1.S1_at--304--6071Chr02:30741224..30741248 (25 bp)
GAGTTTATTCTACTTGGCGCAGATA
LOC_Os02g50350
Os.4862.1.S1_at--286--5051Chr02:30740872..30740896 (25 bp)
GCAGAGCTGCAGGATTTTATGAGAC
LOC_Os02g50350
Os.4862.1.S1_at--42--6891Chr02:30740150..30740174 (25 bp)
GTATTTCACCACACACACCGATTTG
LOC_Os02g50350
Os.4862.1.S1_at--143--1951Chr02:30740058..30740082 (25 bp)
ACTGGACCGGTGATGGATTCGTCAA
LOC_Os02g50350
Os.4862.1.S1_at--15--7751Chr02:30740018..30740042 (25 bp)
GGTGTCCAACTGATTCGACTCTGAA
LOC_Os02g50350
Os.4862.1.S1_at--1127--10671Chr02:30739982..30740006 (25 bp)
TTCCACCATACTTCCAACTTGTGAT
LOC_Os02g50350
Target Sequence 
TGTGGAGGGTTATTCCACGCCTGGAGGCTATTCTGCGAGAGCCGTGCACCCTATAGCACTTGCGAAAGTCATGCAGATAG
CAAGGATGATGAAAGAAGAATTTGCTGATGGACAGTCACTCTCTGCTATTGGAGGCGTGGAGACTGGCAATGATGCTGCT
GAGTTTATTCTACTTGGCGCAGATACAGTACAGGTATGTACGGGCGTAATGATGCATGGTTATGGCCTTGTAAAGAAGCT
TTGTGCAGAGCTGCAGGATTTTATGAGACAACACAACTTTTCCTCAATAGAAGATTTCCGGGGGGCCTCTCTCCCGTATT
TCACCACACACACCGATTTGGTACATCGGCAANGGGAGGCGATCAACCAGAGGAAGGCTATTAGGAAGGGCCTGGAATCA
GACAAGGACTGGACCGGTGATGGATTCGTCAAGGAGACAGAAAGCATGGTGTCCAACTGATTCGACTCTGAACTCACACC
CCCTTCCACCATACTTCCAACTTGTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4862.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis