Browse Element(s) Details


Os.49577.1.S1_at

Description gb:AK099700.1
DB_XREF= gi:32984909
TID=Os.49577.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49577 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013075C24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013075C24, full insert sequence.
FL= gb:AK099700.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5034011/11MAC/Perforin domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50320Os.47336.1.S1_at11/112+30714987..30720585expressed protein
LOC_Os02g50330OsAffx.12575.1.S1_at11/112+30723201..30730508RNA-directed RNA polymerase 2, putative, expressed
LOC_Os02g50330Os.54038.1.S1_at10/112+30723201..30730508RNA-directed RNA polymerase 2, putative, expressed
LOC_Os02g50340Os.49577.1.S1_at11/112+30730821..30737755MAC/Perforin domain containing protein, expressed
LOC_Os02g50340OsAffx.20484.1.S1_x_at1/112+30730821..30737755MAC/Perforin domain containing protein, expressed
LOC_Os02g50340OsAffx.20484.1.S1_at1/112+30730821..30737755MAC/Perforin domain containing protein, expressed
LOC_Os02g50350Os.4862.1.S1_at11/112+30739743..30743502Dihydroorotate dehydrogenase family protein, expressed
LOC_Os02g50360Os.15647.1.S1_at11/112+30744715..30750643nicastrin, putative, expressed
LOC_Os02g50370Os.25200.1.S1_at10/112+30750806..30756896Helicase associated domain family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006955biological_processimmune response
GO:0008219biological_processcell death
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49577.1.S1_at--453--6151Chr02:30731335..30731359 (25 bp)
GAGGTCGTCGAGTTTCCTGTCCATA
LOC_Os02g50340
Os.49577.1.S1_at--654--791Chr02:30731133..30731157 (25 bp)
ATGGGACCGCAGGATAGCCCCGGTT
LOC_Os02g50340
Os.49577.1.S1_at--70--6011Chr02:30731121..30731145 (25 bp)
GATAGCCCCGGTTACTGGCTCGTCA
LOC_Os02g50340
Os.49577.1.S1_at--229--631Chr02:30731061..30731085 (25 bp)
ATGCTGCATGTCAAGTTCTCACTGC
LOC_Os02g50340
Os.49577.1.S1_at--565--2811Chr02:30731049..30731073 (25 bp)
AAGTTCTCACTGCTAGCCCAAGTTT
LOC_Os02g50340
Os.49577.1.S1_at--1057--1971Chr02:30731041..30731065 (25 bp)
ACTGCTAGCCCAAGTTTCTTGACGA
LOC_Os02g50340
Os.49577.1.S1_at--1106--7211Chr02:30731013..30731037 (25 bp)
GTCGACGAGGGTGTCAAGATGTTCA
LOC_Os02g50340
Os.49577.1.S1_at--990--2791Chr02:30730998..30731022 (25 bp)
AAGATGTTCATGACCATCCCGTGAT
LOC_Os02g50340
Os.49577.1.S1_at--172--5851Chr02:30730987..30731011 (25 bp)
GACCATCCCGTGATCCAGAGTTTGT
LOC_Os02g50340
Os.49577.1.S1_at--806--6071Chr02:30730970..30730994 (25 bp)
GAGTTTGTACAGTTTTCAGCTGCCA
LOC_Os02g50340
Os.49577.1.S1_at--243--5431Chr02:30730823..30730847 (25 bp)
GAACCAGAGGTATCATTCTAACACT
LOC_Os02g50340
Target Sequence 
GAGGTCGTCGAGTTTCCTGTCCATACCCTTCTCGGGGTCGCCGTCGACATCCAGTGGCGCCGCCGAGAAGGGAGGCCGGC
CGGAGCAGGGCGCCTCGCTGGTGGGCGTCGCCAACGTCAACTCCGGCGTGTTCGCCGGCGGGCCGCCGGTGCCCGTCGGC
GCGCAGAAGCTGCTCAAGTTCGTGGACACGTCGCAGGTGACCATGGGACCGCAGGATAGCCCCGGTTACTGGCTCGTCAC
CGGCGCAAGGCTGGACGTCGACAAGGGGAAGATCATGCTGCATGTCAAGTTCTCACTGCTAGCCCAAGTTTCTTGACGAC
GAGTCGACGAGGGTGTCAAGATGTTCATGACCATCCCGTGATCCAGAGTTTGTACAGTTTTCAGCTGCCAAATGCAGATA
TGCTAACAACTGAAAAAACAGAATATTCCAAAAAATTTGATTTTTGATTTTTTTTTTTTGGTTTGGACCCTGAAGATGTT
GCAACGATCTGTAAATGAAAAAAGATAGTAGGAACCAGAGGTATCATTCTAACACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49577.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis