Browse Element(s) Details


OsAffx.24809.1.S1_x_at

Description tigr:9630.m04937
TID=OsAffx.24809.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5039011/11hypothetical protein
LOC_Os02g5040011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50360Os.15647.1.S1_at11/112+30744715..30750643nicastrin, putative, expressed
LOC_Os02g50370Os.25200.1.S1_at10/112+30750806..30756896Helicase associated domain family protein, expressed
LOC_Os02g50380OsAffx.9996.1.S1_x_at1/112+30763455..30763916retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g50390OsAffx.24809.1.S1_x_at11/112+30770123..30770659hypothetical protein
LOC_Os02g50390OsAffx.24809.1.S1_at11/112+30770123..30770659hypothetical protein
LOC_Os02g50400OsAffx.24809.1.S1_x_at11/112+30776055..30776285hypothetical protein
LOC_Os02g50400OsAffx.24809.1.S1_at11/112+30776055..30776285hypothetical protein
LOC_Os02g50410OsAffx.3026.1.S1_at11/112+30779781..30782367expressed protein
LOC_Os02g50410Os.29043.1.S1_at2/112+30779781..30782367expressed protein
LOC_Os02g50410OsAffx.28705.1.S1_at1/112+30779781..30782367expressed protein
LOC_Os02g50420NANA2+30782962..30783240hypothetical protein
LOC_Os02g50430OsAffx.12577.1.S1_at11/112+30784625..30785446hypothetical protein
LOC_Os02g50440NANA2+30787516..30790659hypothetical protein
LOC_Os02g50450OsAffx.24811.1.S1_at11/112+30793406..30796666hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24809.1.S1_x_at--968--3852Chr02:30776088..30776112 (25 bp)
CTGATCGTGATGGTGATGGTGTTCT
LOC_Os02g50400
OsAffx.24809.1.S1_x_at--835--812Chr02:30776103..30776127 (25 bp)
ATGGTGTTCTTGGTCGTGTCTGGCA
LOC_Os02g50400
OsAffx.24809.1.S1_x_at--936--8612Chr02:30776104..30776128 (25 bp)
TGGTGTTCTTGGTCGTGTCTGGCAC
LOC_Os02g50400
OsAffx.24809.1.S1_x_at--298--5972Chr02:30776167..30776191 (25 bp)
GAGAAGACACCGCCGGCGACGACTC
LOC_Os02g50400
OsAffx.24809.1.S1_x_at--851--1992Chr02:30776188..30776212 (25 bp)
ACTCCGTCGTCGTCAGGTTTCTCCG
LOC_Os02g50400
OsAffx.24809.1.S1_x_at--284--7212Chr02:30776193..30776217 (25 bp)
GTCGTCGTCAGGTTTCTCCGGCAGC
LOC_Os02g50400
OsAffx.24809.1.S1_x_at--709--4012Chr02:30776198..30776222 (25 bp)
CGTCAGGTTTCTCCGGCAGCTGTAT
LOC_Os02g50400
OsAffx.24809.1.S1_x_at--660--7872Chr02:30776203..30776227 (25 bp)
GGTTTCTCCGGCAGCTGTATCTGCA
LOC_Os02g50400
OsAffx.24809.1.S1_x_at--796--3872Chr02:30776217..30776241 (25 bp)
CTGTATCTGCACAAGCTTGCTGGTC
LOC_Os02g50400
OsAffx.24809.1.S1_x_at--168--6912Chr02:30776219..30776243 (25 bp)
GTATCTGCACAAGCTTGCTGGTCCA
LOC_Os02g50400
OsAffx.24809.1.S1_x_at--569--472Chr02:30776221..30776245 (25 bp)
ATCTGCACAAGCTTGCTGGTCCAGG
LOC_Os02g50400
Target Sequence 
CTGATCGTGATGGTGATGGTGTTCTTGGTCGTGTCTGGCACNGCGGCGGCGCGGCCATTGGNGGGACAGGAATGGNCCGG
AGAAGACACCGCCGGCGACGACTCCGTCGTCGTCAGGTTTCTCCGGCAGCTGTATCTGCACAAGCTTGCTGGTCCAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24809.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis