Browse Element(s) Details


OsAffx.12577.1.S1_at

Description tigr:9630.m04941
TID=OsAffx.12577.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5043011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50380OsAffx.9996.1.S1_x_at1/112+30763455..30763916retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g50390OsAffx.24809.1.S1_x_at11/112+30770123..30770659hypothetical protein
LOC_Os02g50390OsAffx.24809.1.S1_at11/112+30770123..30770659hypothetical protein
LOC_Os02g50400OsAffx.24809.1.S1_x_at11/112+30776055..30776285hypothetical protein
LOC_Os02g50400OsAffx.24809.1.S1_at11/112+30776055..30776285hypothetical protein
LOC_Os02g50410OsAffx.3026.1.S1_at11/112+30779781..30782367expressed protein
LOC_Os02g50410Os.29043.1.S1_at2/112+30779781..30782367expressed protein
LOC_Os02g50410OsAffx.28705.1.S1_at1/112+30779781..30782367expressed protein
LOC_Os02g50420NANA2+30782962..30783240hypothetical protein
LOC_Os02g50430OsAffx.12577.1.S1_at11/112+30784625..30785446hypothetical protein
LOC_Os02g50440NANA2+30787516..30790659hypothetical protein
LOC_Os02g50450OsAffx.24811.1.S1_at11/112+30793406..30796666hypothetical protein
LOC_Os02g50460OsAffx.24812.1.S1_s_at11/112+30800132..30801657U-box domain containing protein, expressed
LOC_Os02g50460Os.36435.2.S1_x_at1/112+30800132..30801657U-box domain containing protein, expressed
LOC_Os02g50470Os.55450.1.S1_x_at11/112+30807616..30808850expressed protein
LOC_Os02g50470Os.55450.1.S1_at11/112+30807616..30808850expressed protein
LOC_Os02g50470OsAffx.28148.1.S1_x_at10/112+30807616..30808850expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12577.1.S1_at--221--3831Chr02:30784673..30784697 (25 bp)
CTGCTGTCGGCCGTGTCAGGATCAG
LOC_Os02g50430
OsAffx.12577.1.S1_at--241--4111Chr02:30784714..30784738 (25 bp)
CGACAAATGGGTTGGCATGGCCACC
LOC_Os02g50430
OsAffx.12577.1.S1_at--36--4632Chr02:30784743..30784767 (25 bp)
GCGATCATCCTCTCATACAGTTCCT
LOC_Os02g50430
OsAffx.12577.1.S1_at--1046--6691Chr02:30784762..30784786 (25 bp)
GTTCCTCCAAAATCTGTATCTGCAA
LOC_Os02g50430
OsAffx.12577.1.S1_at--867--4811Chr02:30785148..30785172 (25 bp)
GCTCTCACAAACCTTGCAAGTACTG
LOC_Os02g50430
OsAffx.12577.1.S1_at--553--1511Chr02:30785257..30785281 (25 bp)
AGCAGCCATGCATGTCCACAGAAAT
LOC_Os02g50430
OsAffx.12577.1.S1_at--774--2251Chr02:30785309..30785333 (25 bp)
AAATATCTCACCTATGGAACACCCG
LOC_Os02g50430
OsAffx.12577.1.S1_at--121--8171Chr02:30785324..30785348 (25 bp)
GGAACACCCGAGAGTCAAGCAGATT
LOC_Os02g50430
OsAffx.12577.1.S1_at--473--6591Chr02:30785345..30785369 (25 bp)
GATTGCATCATTACTCTGTTCTTCC
LOC_Os02g50430
OsAffx.12577.1.S1_at--925--10651Chr02:30785366..30785390 (25 bp)
TTCCCGTCTCTATTTTGCGAGCTGA
LOC_Os02g50430
OsAffx.12577.1.S1_at--994--5891Chr02:30785384..30785408 (25 bp)
GAGCTGAGGCGTCTATCTCTGAGAA
LOC_Os02g50430
Target Sequence 
CTGCTGTCGGCCGTGTCAGGATCAGCGCGGCCGATGGGAGGCGACAAATGGGTTGGCATGGCCACCTCCGGCGATCATCC
TCTCATACAGTTCCTCCAAAATCTGTATCTGCAACAGCTTTCACAACCAGAAATGTATGGATTATTTGCTCTCACAAACC
TTGCAAGTACTGGAATTGATGGACTAGGTACCGATGGAAAAGCAGCCATGCATGTCCACAGAAATGTCTACATAAATTGC
ATCGATGGTCAGAAATATCTCACCTATGGAACACCCGAGAGTCAAGCAGATTGCATCATTACTCTGTTCTTCCCGTCTCT
ATTTTGCGAGCTGAGGCGTCTATCTCTGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12577.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis