Browse Element(s) Details


OsAffx.24812.1.S1_s_at

Description tigr:9630.m04944
TID=OsAffx.24812.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=immediate-early fungal elicitor protein CMPG1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5046011/11U-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50400OsAffx.24809.1.S1_x_at11/112+30776055..30776285hypothetical protein
LOC_Os02g50400OsAffx.24809.1.S1_at11/112+30776055..30776285hypothetical protein
LOC_Os02g50410OsAffx.3026.1.S1_at11/112+30779781..30782367expressed protein
LOC_Os02g50410Os.29043.1.S1_at2/112+30779781..30782367expressed protein
LOC_Os02g50410OsAffx.28705.1.S1_at1/112+30779781..30782367expressed protein
LOC_Os02g50420NANA2+30782962..30783240hypothetical protein
LOC_Os02g50430OsAffx.12577.1.S1_at11/112+30784625..30785446hypothetical protein
LOC_Os02g50440NANA2+30787516..30790659hypothetical protein
LOC_Os02g50450OsAffx.24811.1.S1_at11/112+30793406..30796666hypothetical protein
LOC_Os02g50460OsAffx.24812.1.S1_s_at11/112+30800132..30801657U-box domain containing protein, expressed
LOC_Os02g50460Os.36435.2.S1_x_at1/112+30800132..30801657U-box domain containing protein, expressed
LOC_Os02g50470Os.55450.1.S1_x_at11/112+30807616..30808850expressed protein
LOC_Os02g50470Os.55450.1.S1_at11/112+30807616..30808850expressed protein
LOC_Os02g50470OsAffx.28148.1.S1_x_at10/112+30807616..30808850expressed protein
LOC_Os02g50480Os.51036.1.A1_at11/112+30817676..30823570histidine kinase 1, putative, expressed
LOC_Os02g50480OsAffx.12578.1.S1_at11/112+30817676..30823570histidine kinase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0042828biological_processresponse to pathogen
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24812.1.S1_s_at--219--2611Chr02:30800337..30800361 (25 bp)
AACGCGTCGCGAGACAGCACCGAGT
LOC_Os02g50460
OsAffx.24812.1.S1_s_at--400--4011Chr02:30800333..30800357 (25 bp)
CGTCGCGAGACAGCACCGAGTGCAT
LOC_Os02g50460
OsAffx.24812.1.S1_s_at--459--3411Chr02:30800323..30800347 (25 bp)
CAGCACCGAGTGCATCGAGACGGCA
LOC_Os02g50460
OsAffx.24812.1.S1_s_at--364--1111Chr02:30800315..30800339 (25 bp)
AGTGCATCGAGACGGCAGATTTCAA
LOC_Os02g50460
OsAffx.24812.1.S1_s_at--561--1391Chr02:30800280..30800304 (25 bp)
AGACCCTTCATTTGAGTGTGCAGAG
LOC_Os02g50460
OsAffx.24812.1.S1_s_at--825--6031Chr02:30800256..30800280 (25 bp)
GAGATCGATTAATTAGCTAGGTCAA
LOC_Os02g50460
OsAffx.24812.1.S1_s_at--88--6031Chr02:30800252..30800276 (25 bp)
TCGATTAATTAGCTAGGTCAAGAAC
LOC_Os02g50460
OsAffx.24812.1.S1_s_at--604--7511Chr02:30800215..30800239 (25 bp)
GTGGATACTAAGATGCACATACAAT
LOC_Os02g50460
OsAffx.24812.1.S1_s_at--256--6331Chr02:30800204..30800228 (25 bp)
GATGCACATACAATTAGGTTTAGAT
LOC_Os02g50460
OsAffx.24812.1.S1_s_at--882--7871Chr02:30800188..30800212 (25 bp)
GGTTTAGATATCATCCTTCATTTGA
LOC_Os02g50460
OsAffx.24812.1.S1_s_at--411--2991Chr02:30800162..30800186 (25 bp)
AATGAGTACAGACCGTATTTGGCAG
LOC_Os02g50460
Target Sequence 
AACGCGTCGCGAGACAGCACCGAGTGCATCGAGACGGCAGATTTCAAGGGGCTGAAGAGACCCTTCATTTGAGTGTGCAG
AGAGATCGATTAATTAGCTAGGTCAAGAACACAATCAAAGATGTGGATACTAAGATGCACATACAATTAGGTTTAGATAT
CATCCTTCATTTGAAAATGAGTACAGACCGTATTTGGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24812.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis