Browse Element(s) Details


OsAffx.12578.1.S1_at

Description tigr:9630.m04946
TID=OsAffx.12578.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to histidine kinase 1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5048011/11histidine kinase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50450OsAffx.24811.1.S1_at11/112+30793406..30796666hypothetical protein
LOC_Os02g50460OsAffx.24812.1.S1_s_at11/112+30800132..30801657U-box domain containing protein, expressed
LOC_Os02g50460Os.36435.2.S1_x_at1/112+30800132..30801657U-box domain containing protein, expressed
LOC_Os02g50470Os.55450.1.S1_x_at11/112+30807616..30808850expressed protein
LOC_Os02g50470Os.55450.1.S1_at11/112+30807616..30808850expressed protein
LOC_Os02g50470OsAffx.28148.1.S1_x_at10/112+30807616..30808850expressed protein
LOC_Os02g50480Os.51036.1.A1_at11/112+30817676..30823570histidine kinase 1, putative, expressed
LOC_Os02g50480OsAffx.12578.1.S1_at11/112+30817676..30823570histidine kinase 1, putative, expressed
LOC_Os02g50490Os.17509.1.S1_at11/112+30833330..30836720Glycosyl hydrolase family 9 protein, expressed
LOC_Os02g50490OsAffx.15414.1.S1_x_at3/112+30833330..30836720Glycosyl hydrolase family 9 protein, expressed
LOC_Os02g50490OsAffx.22010.1.S1_x_at3/112+30833330..30836720Glycosyl hydrolase family 9 protein, expressed
LOC_Os02g50500NANA2+30837115..30837549transposon protein, putative, unclassified
LOC_Os02g50510OsAffx.22848.3.S1_x_at4/112+30838230..30844188retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g50510OsAffx.22848.4.S1_x_at1/112+30838230..30844188retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g50520NANA2+30847106..30847687transposon protein, putative, unclassified
LOC_Os02g50530OsAffx.30226.2.S1_x_at1/112+30848171..30851796retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g50530OsAffx.442.1.S1_x_at1/112+30848171..30851796retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g50530Os.46785.2.S1_x_at1/112+30848171..30851796retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0009736biological_processcytokinin mediated signaling
GO:0004673molecular_functionprotein histidine kinase activity
GO:0009884molecular_functioncytokinin receptor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12578.1.S1_at--824--951Chr02:30822403..30822427 (25 bp)
AGGACAGATATGGATCCGCATTTGA
LOC_Os02g50480
OsAffx.12578.1.S1_at--811--831Chr02:30822412..30822436 (25 bp)
ATGGATCCGCATTTGATATTGTGAT
LOC_Os02g50480
OsAffx.12578.1.S1_at--1093--2331Chr02:30822510..30822534 (25 bp)
AAAGACAATCAAAATAGGCCCTCAT
LOC_Os02g50480
OsAffx.12578.1.S1_at--766--2431Chr02:30822520..30822544 (25 bp)
AAAATAGGCCCTCATTTCTCCGCAG
LOC_Os02g50480
OsAffx.12578.1.S1_at--844--10591Chr02:30822535..30822559 (25 bp)
TTCTCCGCAGCTTGCTGATTGGGAA
LOC_Os02g50480
OsAffx.12578.1.S1_at--1122--7071Chr02:30822588..30822612 (25 bp)
GTCAATCTCAGGGTTGCTGCAGCTG
LOC_Os02g50480
OsAffx.12578.1.S1_at--96--9051Chr02:30822605..30822629 (25 bp)
TGCAGCTGCGCTCAAGAAATATGGT
LOC_Os02g50480
OsAffx.12578.1.S1_at--803--811Chr02:30822625..30822649 (25 bp)
ATGGTGCCAAAGTTCATTGTGTTGA
LOC_Os02g50480
OsAffx.12578.1.S1_at--88--2811Chr02:30822658..30822682 (25 bp)
AAGATGCAGTCTCCTTACTTCAACA
LOC_Os02g50480
OsAffx.12578.1.S1_at--30--3251Chr02:30822681..30822705 (25 bp)
CAACCACACTGCTTTGATGCATGCT
LOC_Os02g50480
OsAffx.12578.1.S1_at--182--4891Chr02:30822691..30822715 (25 bp)
GCTTTGATGCATGCTTTATGGATGT
LOC_Os02g50480
Target Sequence 
AGGACAGATATGGATCCGCATTTGATATTGTGATGTATAAACCTATAAGGGCAAGCACAATTGCTTCTTGCCTTCAACAG
TTGCTAAAAGTAGTGATGCCTGAAAGGAAAGACAATCAAAATAGGCCCTCATTTCTCCGCAGCTTGCTGATTGGGAAGAA
TATATTGATTGTAGATGATAATAAAGTCAATCTCAGGGTTGCTGCAGCTGCGCTCAAGAAATATGGTGCCAAAGTTCATT
GTGTTGAAAGCGGCAAAGATGCAGTCTCCTTACTTCAACAACCACACTGCTTTGATGCATGCTTTATGGATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12578.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis