Browse Element(s) Details


OsAffx.24807.1.S1_at

Description tigr:9630.m04920
TID=OsAffx.24807.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5022010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50150OsAffx.24806.1.S1_at11/112+30630253..30632610Caleosin related protein
LOC_Os02g50150OsAffx.28165.1.S1_at1/112+30630253..30632610Caleosin related protein
LOC_Os02g50174OsAffx.12573.1.S1_s_at11/112+30636523..30648727Caleosin related protein, expressed
LOC_Os02g50174Os.9760.1.S1_at11/112+30636523..30648727Caleosin related protein, expressed
LOC_Os02g50174OsAffx.12573.1.S1_at11/112+30636523..30648727Caleosin related protein, expressed
LOC_Os02g50174OsAffx.26548.1.S1_at3/112+30636523..30648727Caleosin related protein, expressed
LOC_Os02g50200Os.56026.1.A1_at10/112+30649418..3065051633 kDa secretory protein, putative, expressed
LOC_Os02g50210Os.7229.1.S1_at10/112+30652557..30653352Erwinia induced protein 2, putative, expressed
LOC_Os02g50220OsAffx.24807.1.S1_at10/112+30655447..30658484expressed protein
LOC_Os02g50220Os.50196.2.S1_x_at1/112+30655447..30658484expressed protein
LOC_Os02g50230Os.39981.1.S1_at11/112+30663348..30667188Peptidase family M48 containing protein, expressed
LOC_Os02g50240Os.7909.1.S1_at11/112+30668911..30672790Glutamine synthetase root isozyme 3, putative, expressed
LOC_Os02g50250OsAffx.3025.1.S1_at11/112+30679458..30680309hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24807.1.S1_at--936--2831NONE
AAGTCGGGCATGTCATCGCAAGGCA
NONE
OsAffx.24807.1.S1_at--985--4351Chr02:30658077..30658101 (25 bp)
GCCAACTTTGTTGAGGAGCTCCTCT
LOC_Os02g50220
OsAffx.24807.1.S1_at--365--9551Chr02:30658099..30658123 (25 bp)
TCTATGTTCCGGTCGATAGGATCCC
LOC_Os02g50220
OsAffx.24807.1.S1_at--403--271Chr02:30658114..30658138 (25 bp)
ATAGGATCCCGCACGCTGAGTGGGT
LOC_Os02g50220
OsAffx.24807.1.S1_at--480--8631Chr02:30658134..30658158 (25 bp)
TGGGTGTCCCTTTTTATGCGGAATT
LOC_Os02g50220
OsAffx.24807.1.S1_at--187--5231Chr02:30658154..30658217 (25 bp)
GAATTTCCTCCACAGATTACTCAAT
LOC_Os02g50220
OsAffx.24807.1.S1_at--526--9771Chr02:30658217..30658241 (25 bp)
TAAGCCTAACGCCTACTGTGTTTTG
LOC_Os02g50220
OsAffx.24807.1.S1_at--1107--7411Chr02:30658234..30658258 (25 bp)
GTGTTTTGCCTTGTGATCATCGTAG
LOC_Os02g50220
OsAffx.24807.1.S1_at--927--4691Chr02:30658302..30658326 (25 bp)
GCGGCAGGATATGACCCACGTGCAA
LOC_Os02g50220
OsAffx.24807.1.S1_at--72--3291Chr02:30658324..30658348 (25 bp)
CAAACCCGAACTTCTGGGAGGCACT
LOC_Os02g50220
OsAffx.24807.1.S1_at--1023--7631Chr02:30658366..30658390 (25 bp)
GGGAGGGTACTACACATCCACCGTT
LOC_Os02g50220
Target Sequence 
AAGTCGGGCATGTCATCGCAAGGCACCGTGTGGAGAGGAAGCGGAACAAATTTTGGGTCTCCGTCCTTGCCAACTTTGTT
GAGGAGCTCCTCTATGTTCCGGTCGATAGGATCCCGCACGCTGAGTGGGTGTCCCTTTTTATGCGGAATTTCCTCCACAG
ATTACTCAATAAGCCTAACGCCTACTGTGTTTTGCCTTGTGATCATCGTAGAACGGAACTAGAGGCAGACCGCATCGGCC
TCATGCTGCAGGCTGCGGCAGGATATGACCCACGTGCAAACCCGAACTTCTGGGAGGCACTCATGAAGTTTGGAAATGGG
GAGGGTACTACACATCCACCGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24807.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis