Browse Element(s) Details


Os.12048.1.S1_at

Description gb:AK065217.1
DB_XREF= gi:32975235
TID=Os.12048.1
CNT=22
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12048 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033080E11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002G10, full insert sequence.
FL= gb:AK102015.1 gb:AK065217.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0335011/11lysine and histidine specific transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g03310Os.23145.1.S1_at11/118+1530265..1534032Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os08g03320OsAffx.16805.1.S1_at11/118+1534448..1535987F-box domain containing protein, expressed
LOC_Os08g03330OsAffx.29012.1.S1_at11/118+1537906..1539141hypothetical protein
LOC_Os08g03350Os.12048.1.S1_at11/118+1555409..1560669lysine and histidine specific transporter, putative, expressed
LOC_Os08g03350Os.56760.1.S1_at1/118+1555409..1560669lysine and histidine specific transporter, putative, expressed
LOC_Os08g03360Os.11683.1.S1_at11/118+1561209..1566718DNA-binding bromodomain-containing protein, putative, expressed
LOC_Os08g03360OsAffx.16806.1.S1_at11/118+1561209..1566718DNA-binding bromodomain-containing protein, putative, expressed
LOC_Os08g03370Os.53197.1.S1_at10/118+1571881..1573933Uncharacterized BCR, COG1963 family protein, expressed
LOC_Os08g03380Os.11415.1.S1_at11/118+1574605..1578609DnaJ domain containing protein, expressed
LOC_Os08g03390Os.12068.1.S1_at11/118+1578786..1582657Step II splicing factor, putative, expressed
LOC_Os08g03400Os.55681.1.S1_x_at11/118+1582861..1583862expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0016020cellular_componentmembrane
GO:0005279molecular_functionamino acid-polyamine transporter activity
GO:0015359molecular_functionamino acid permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12048.1.S1_at--328--51Chr08:1559871..1559895 (25 bp)
ATTGCTTGGGTTCTTCGGTGGATTC
LOC_Os08g03350
Os.12048.1.S1_at--762--10631Chr08:1560019..1560043 (25 bp)
TTCCCTGCATCATGTGGCTAGCAAT
LOC_Os08g03350
Os.12048.1.S1_at--565--5311Chr08:1560055..1560079 (25 bp)
GAAGGTTCAGTCTCTCATGGTTCAC
LOC_Os08g03350
Os.12048.1.S1_at--389--2571Chr08:1560217..1560236 (20 bp)
AACTGGATCTGCATCATTCTTGGAG
LOC_Os08g03350
Os.12048.1.S1_at--301--8851Chr08:1560246..1560270 (25 bp)
TGATCCTGTCACCAATCGGAGGACT
LOC_Os08g03350
Os.12048.1.S1_at--466--951Chr08:1560265..1560289 (25 bp)
AGGACTCCGGCAGATCATCATAGAT
LOC_Os08g03350
Os.12048.1.S1_at--10--1171Chr08:1560333..1560357 (25 bp)
AGTAATCTCATGTGGCTGCAAGTTC
LOC_Os08g03350
Os.12048.1.S1_at--1114--6751Chr08:1560354..1560378 (25 bp)
GTTCAAGTTCTACTCATAGGCACAC
LOC_Os08g03350
Os.12048.1.S1_at--632--10772Chr11:26996754..26996774 (21 bp)
TTGAGACGTGTCATGCATGCATCAG
NONE
Os.12048.1.S1_at--727--1331Chr08:1560533..1560557 (25 bp)
AGAGGTTGTGTTTGTGCATTGTCGC
LOC_Os08g03350
Os.12048.1.S1_at--843--7231Chr08:1560553..1560577 (25 bp)
GTCGCTGGGTTAATCATACTGTGTT
LOC_Os08g03350
Target Sequence 
ATTGCTTGGGTTCTTCGGTGGATTCGCCTTCGCGCCNACTACTTACTTCCTTCCCTGCATCATGTGGCTAGCAATCTACA
AGCCAAGAAGGTTCAGTCTCTCATGGTTCACCAACTGGATCTGCATCATTCTTGGAGTGATGCTCATGATCCTGTCACCA
ATCGGAGGACTCCGGCAGATCATCATAGATGCCAAGACATACAAGTTCTACTCNTAGATTACATGTTCATCATAGTAATC
TCATGTGGCTGCAAGTTCAAGTTCTACTCATAGGCACACATGATGAAACCAGTTACTGCAAAAGTTTTTTTTTTAGCCAA
CAAAGGAAGAAGAAAGTTCAACACCAAGTTCATACATTGTCACTACGACGATGATCTTTTGAGACGTGTCATGCATGCAT
CAGTCGTTAATTATGTGACTTAATTAAAAACAAAGAGGTTGTGTTTGTGCATTGTCGCTGGGTTAATCATACTGTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12048.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis