Browse Element(s) Details


Os.12050.1.S1_a_at

Description gb:AK061336.1
DB_XREF= gi:32971354
TID=Os.12050.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12050 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Ras-related GTP-binding protein (OSJNBb0081B07.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-303-B12, full insert sequence.
FL= gb:AK061336.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6087011/11Ras-related protein Rab11A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60850Os.27063.1.S1_at11/113+34513269..34515907POT family protein, expressed
LOC_Os03g60870Os.12050.1.S1_a_at11/113+34532068..34535425Ras-related protein Rab11A, putative, expressed
LOC_Os03g60880Os.18745.1.S1_at10/113+34536291..34540141Permease I, putative, expressed
LOC_Os03g60890Os.20497.1.S1_at11/113+34542433..34544666calmodulin-binding protein, putative
LOC_Os03g60890Os.18942.2.S1_at3/113+34542433..34544666calmodulin-binding protein, putative
LOC_Os03g60900Os.6224.1.S1_at10/113+34546528..34547149expressed protein
LOC_Os03g60910Os.17149.1.S1_at11/113+34548697..34553294pentatricopeptide, putative, expressed
LOC_Os03g60910Os.17149.2.S1_x_at11/113+34548697..34553294pentatricopeptide, putative, expressed
LOC_Os03g60910OsAffx.20433.1.S1_x_at1/113+34548697..34553294pentatricopeptide, putative, expressed
LOC_Os03g60920Os.15547.1.S1_at11/113+34553529..34555886methylase family protein, expressed
LOC_Os03g60930NANA3+34557191..34564387RNA recognition motif family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12050.1.S1_a_at--69--931Chr03:34532636..34532660 (25 bp)
AGGCATTTCAGACTATCCTTAAAGA
LOC_Os03g60870
Os.12050.1.S1_a_at--1160--5291Chr03:34532590..34532614 (25 bp)
GAAGGCACTTGCTGCCCAAGAGGCA
LOC_Os03g60870
Os.12050.1.S1_a_at--664--8271Chr03:34532562..34532586 (25 bp)
GGCAGTGGACCTCCCACTCAAGGAA
LOC_Os03g60870
Os.12050.1.S1_a_at--748--2911Chr03:34532543..34532567 (25 bp)
AAGGAACCACCATCAATGTTACTGA
LOC_Os03g60870
Os.12050.1.S1_a_at--825--10471Chr03:34532525..34532549 (25 bp)
TTACTGATTCTGCTGTTAACACAAA
LOC_Os03g60870
Os.12050.1.S1_a_at--125--631Chr03:34532494..34532518 (25 bp)
ATGCTGTTCTTCCTAGGTGCAACCG
LOC_Os03g60870
Os.12050.1.S1_a_at--957--91Chr03:34532443..34532467 (25 bp)
ATTCCCATGGATCTTACAGCACTAG
LOC_Os03g60870
Os.12050.1.S1_a_at--339--10391Chr03:34532415..34532439 (25 bp)
TTATGTAGGTCGCTTGACTCCTTTT
LOC_Os03g60870
Os.12050.1.S1_a_at--437--1991Chr03:34532399..34532423 (25 bp)
ACTCCTTTTGGCCTGTAATTCTGGT
LOC_Os03g60870
Os.12050.1.S1_a_at--958--151Chr03:34532301..34532325 (25 bp)
ATTTTGGTAGAGACTGTTGCTGGGC
LOC_Os03g60870
Os.12050.1.S1_a_at--1106--6671Chr03:34532286..34532310 (25 bp)
GTTGCTGGGCAAGACTTTCTACAGT
LOC_Os03g60870
Target Sequence 
AGGCATTTCAGACTATCCTTAAAGATATTCATCAAATCATCAGCAAGAAGGCACTTGCTGCCCAAGAGGCAGCAGGCAGT
GGACCTCCCACTCAAGGAACCACCATCAATGTTACTGATTCTGCTGTTAACACAAAGAGAGGATGCTGTTCTTCCTAGGT
GCAACCGAAGATTTGGTGATGCTGCAAAAGGAAATTCCCATGGATCTTACAGCACTAGGTGTTATGTAGGTCGCTTGACT
CCTTTTGGCCTGTAATTCTGGTGGGGTTGTAATCACAATTTAAATCGCTAGAAAGAAATATTCCTTTTAAGGTAGATACC
ATGTGTAGTTGCAAAATTTTGGTAGAGACTGTTGCTGGGCAAGACTTTCTACAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12050.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis