Browse Element(s) Details


Os.12071.1.S1_at

Description gb:AK101971.1
DB_XREF= gi:32987180
TID=Os.12071.1
CNT=32
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12071 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative nascent polypeptide associated complex alpha chain (P0504E02.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033076L24, full insert sequence.
FL= gb:AK101971.1 gb:AK109341.2 gb:AK070627.1 gb:AK059437.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7123011/11Nascent polypeptide-associated complex alpha subunit-like protein 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71200Os.33686.1.S1_at11/111+41520199..41525752Ribonucleoprotein, putative, expressed
LOC_Os01g71210Os.51276.1.S1_x_at11/111+41528408..41529133expressed protein
LOC_Os01g71220Os.53646.1.S1_at10/111+41530698..41535561hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os01g71230Os.12071.1.S1_at11/111+41541160..41543918Nascent polypeptide-associated complex alpha subunit-like protein 3, putative, expressed
LOC_Os01g71240Os.34808.1.S1_at11/111+41546886..41554183Calcium-transporting ATPase 11, plasma membrane-type, putative, expressed
LOC_Os01g71250Os.28979.2.S1_x_at11/111+41554233..41556655expressed protein
LOC_Os01g71250Os.28979.1.S1_at11/111+41554233..41556655expressed protein
LOC_Os01g71256Os.33291.1.S1_a_at10/111+41557703..41562435expressed protein
LOC_Os01g71262Os.55362.1.S1_at11/111+41563261..41565644expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12071.1.S1_at--874--1411Chr01:41543352..41543376 (25 bp)
AGACACCTACGTCATCTTCGGTGAG
LOC_Os01g71230
Os.12071.1.S1_at--1138--1351Chr01:41543421..41543445 (25 bp)
AGAGCAGTTCAAGGCACCTGACCTG
LOC_Os01g71230
Os.12071.1.S1_at--158--891Chr01:41543432..41543456 (25 bp)
AGGCACCTGACCTGAGTAACGTCAT
LOC_Os01g71230
Os.12071.1.S1_at--185--9811Chr01:41543448..41543472 (25 bp)
TAACGTCATCTCAAAGGCCGAGCCT
LOC_Os01g71230
Os.12071.1.S1_at--1090--7171Chr01:41543508..41543532 (25 bp)
GTCTGGCGTCGAGCCGAAGGACATT
LOC_Os01g71230
Os.12071.1.S1_at--721--10751Chr01:41543531..41543555 (25 bp)
TTGAACTGGTGATGACACAGGCCAC
LOC_Os01g71230
Os.12071.1.S1_at--263--5291Chr01:41543586..41543610 (25 bp)
GAAGGCTGCTAACGGTGACATTGTC
LOC_Os01g71230
Os.12071.1.S1_at--373--51Chr01:41543701..41543725 (25 bp)
ATTGATAGGATGAACCCTCCTCCTT
LOC_Os01g71230
Os.12071.1.S1_at--835--7391Chr01:41543754..41543778 (25 bp)
GTGTTACGAAACTTCAAGGCCTATA
LOC_Os01g71230
Os.12071.1.S1_at--887--1251Chr01:41543792..41543816 (25 bp)
AGATCGACTGTTTGCTATTTAATAT
LOC_Os01g71230
Os.12071.1.S1_at--334--631Chr01:41543854..41543878 (25 bp)
ATGCTCCATGGCTTCTATTATCGAA
LOC_Os01g71230
Target Sequence 
AGACACCTACGTCATCTTCGGTGAGGCGAAGATCGAGGATCTGAGCTCGCAGCTGCAGACTCAAGCTGCAGAGCAGTTCA
AGGCACCTGACCTGAGTAACGTCATCTCAAAGGCCGAGCCTTCTGCAGCAGCTCAGGATGACGAGGAGGTCGATGAGTCT
GGCGTCGAGCCGAAGGACATTGAACTGGTGATGACACAGGCCACCGTGTCGAGATCGAGGGCGGTGAAGGCGCTGAAGGC
TGCTAACGGTGACATTGTCACTGCCATCATGGAGCTGACGAACTAGTGGAATCACGAAACGTTGTGGTGGGGATGGAACT
TGTGGGTTAAATTTTAATGTTGAGGGCGCATTGATAGGATGAACCCTCCTCCTTGGTTATGCTATCTTGAGAGCGGTAGG
TAGTGTTACGAAACTTCAAGGCCTATATCATCCTTTGATAAGATCGACTGTTTGCTATTTAATATGCCTTTTTCATTCAN
NNNNNNNNCTACACATGCCTGCATGCTCCATGGCTTCTATTATCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12071.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis