Browse Element(s) Details


Os.12078.1.S1_at

Description gb:AK069773.1
DB_XREF= gi:32979797
TID=Os.12078.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.12078 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023027E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023027E08, full insert sequence.
FL= gb:AK069773.1 gb:AK058351.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4273011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42670Os.10646.1.S1_at11/112+25659145..25665764expressed protein
LOC_Os02g42690Os.49563.2.S1_x_at11/112+25665683..25671356Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g42690Os.49563.1.S1_at11/112+25665683..25671356Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g42690Os.49563.3.S1_x_at11/112+25665683..25671356Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g42690Os.51441.1.S1_at11/112+25665683..25671356Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g42690Os.49563.4.S1_x_at11/112+25665683..25671356Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g42700Os.37995.1.S1_at10/112+25673843..25677732thioredoxin family protein, expressed
LOC_Os02g42710Os.23529.1.A1_at11/112+25678175..25681226Elicitor-responsive protein 3, putative, expressed
LOC_Os02g42720OsAffx.12460.1.S1_at9/112+25683447..25684411hypothetical protein
LOC_Os02g42730Os.12078.1.S1_at11/112+25688048..25690666expressed protein
LOC_Os02g42740Os.52752.1.S1_at10/112+25691080..25692876Cytochrome b5-like Heme/Steroid binding domain containing protein, expressed
LOC_Os02g42750NANA2+25703665..25709364retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g42760NANA2+25712955..25714013hypothetical protein
LOC_Os02g42770Os.51348.1.S1_x_at3/112+25714631..25716884retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12078.1.S1_at--1108--211Chr02:25689700..25689724 (25 bp)
ATATACTCTGGAGAAGGCCCTTCTG
LOC_Os02g42730
Os.12078.1.S1_at--71--2951Chr02:25689713..25689737 (25 bp)
AAGGCCCTTCTGATGTTACACCAAT
LOC_Os02g42730
Os.12078.1.S1_at--549--3191Chr02:25689734..25689758 (25 bp)
CAATCGATAGACTTGACTCTCCTAA
LOC_Os02g42730
Os.12078.1.S1_at--925--5711Chr02:25689748..25690115 (25 bp)
GACTCTCCTAATGCGAAGGTGACAG
LOC_Os02g42730
Os.12078.1.S1_at--392--7371Chr02:25690164..25690188 (25 bp)
GTGACAGTATCTTGCTCCATAAGCT
LOC_Os02g42730
Os.12078.1.S1_at--450--2991Chr02:25690364..25690388 (25 bp)
AATGTATGTTTTCTTTCATCTTCCA
LOC_Os02g42730
Os.12078.1.S1_at--529--691Chr02:25690408..25690432 (25 bp)
ATGACCTTTGTTACTGTCTGTAGCA
LOC_Os02g42730
Os.12078.1.S1_at--102--10071Chr02:25690482..25690506 (25 bp)
TAGGAAAAACTTGTCAGCGCTTGCA
LOC_Os02g42730
Os.12078.1.S1_at--548--1651Chr02:25690497..25690521 (25 bp)
AGCGCTTGCAAGTTCTCTCATTGGC
LOC_Os02g42730
Os.12078.1.S1_at--5--8511Chr02:25690518..25690542 (25 bp)
TGGCAATGTACATAGGTCATCCTGA
LOC_Os02g42730
Os.12078.1.S1_at--65--7131Chr02:25690533..25690557 (25 bp)
GTCATCCTGATACCTCTAGTTTCGT
LOC_Os02g42730
Target Sequence 
ATATACTCTGGAGAAGGCCCTTCTGATGTTACACCAATCGATAGACTTGACTCTCCTAATGCGAAGGTGACAGCCTCCTC
CNGGCATAATTTCCAGGAATCCAAGGGCAGAATTCCTAAAAGTGACAGTATCTTGCTCCATAAGCTTGAAGAAGTTTGTC
AATCAGTTAAGAATCTTGAATCTCTCCTCTTGGGATCACATNCAAGGGCATGATGAGCANCTGAAATGTATGTTTTCTTT
CATCTTCCATCANACAAATGTGTATTGTATGACCTTTGTTACTGTCTGTAGCATTGCATGCAATGTACCAATGCGGGTAA
TTAGGAAACAATTGTTGATACTTAGGAAAAACTTGTCAGCGCTTGCAAGTTCTCTCATTGGCAATGTACATAGGTCATCC
TGATACCTCTAGTTTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12078.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis