Browse Element(s) Details


Os.12091.1.S1_at

Description gb:AK121665.1
DB_XREF= gi:37991288
TID=Os.12091.1
CNT=23
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12091 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033066H03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033066H03, full insert sequence.
FL= gb:AK121665.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0804010/11U6 snRNA-associated Sm-like protein LSm7, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g08020OsAffx.29094.1.S1_at11/118+4540627..4543036expressed protein
LOC_Os08g08030OsAffx.29095.1.S1_at11/118+4545166..4551186Double-strand break repair protein MRE11, putative, expressed
LOC_Os08g08040Os.12091.1.S1_at10/118+4556085..4559028U6 snRNA-associated Sm-like protein LSm7, putative, expressed
LOC_Os08g08050Os.47992.1.S1_at1/118+4560471..4563589retrotransposon protein, putative, unclassified
LOC_Os08g08060Os.5348.1.S1_at11/118+4564674..4574398Pep3/Vps18/deep orange family protein, expressed
LOC_Os08g08070Os.10571.1.S1_at11/118+4575088..4577145Glucose transporter, putative, expressed
LOC_Os08g08070OsAffx.7485.1.S1_x_at1/118+4575088..4577145Glucose transporter, putative, expressed
LOC_Os08g08080Os.27398.1.S1_at11/118+4580134..4584889LOC564510 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005732cellular_componentsmall nucleolar ribonucleoprotein complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12091.1.S1_at--736--3731Chr08:4556162..4556288 (25 bp)
CTAACTCCGATTTGAAGCGACCAGA
LOC_Os08g08040
Os.12091.1.S1_at--946--4691NONE
GCGGCAGGCAAGTTACAGGGACTTT
NONE
Os.12091.1.S1_at--954--5311Chr08:4557837..4557861 (25 bp)
GAAGGGCTATGACCAGCTTCTAAAC
LOC_Os08g08040
Os.12091.1.S1_at--45--5651Chr08:4558295..4558728 (25 bp)
GACAGCTTGGTCTTATTGTCTGTAG
LOC_Os08g08040
Os.12091.1.S1_at--552--1631Chr08:4558735..4558759 (25 bp)
AGCGGTGATGCTTGTATCGCCAACC
LOC_Os08g08040
Os.12091.1.S1_at--727--2611Chr08:4558781..4558805 (25 bp)
AACCCCTTCCAATCTGATGGTGCAT
LOC_Os08g08040
Os.12091.1.S1_at--529--6251Chr08:4558796..4558820 (25 bp)
GATGGTGCATAAACCTGCAGGAGCT
LOC_Os08g08040
Os.12091.1.S1_at--1162--2791Chr08:4558837..4558861 (25 bp)
AAGATCCATGCTCTCCCAGTAGAGA
LOC_Os08g08040
Os.12091.1.S1_at--741--3051Chr08:4558883..4558907 (25 bp)
AATCTGGTGCCACAGTCTCTTATGA
LOC_Os08g08040
Os.12091.1.S1_at--68--8731Chr08:4558912..4558936 (25 bp)
TGTCTCTTATGAACACCAGGTGGTG
LOC_Os08g08040
Os.12091.1.S1_at--725--5351Chr08:4558968..4558992 (25 bp)
GAAGATCCTTGCTTTGTGTCAGATA
LOC_Os08g08040
Target Sequence 
CTAACTCCGATTTGAAGCGACCAGAGGCCGCGGCTAAGGTCCGGGATGTCGGGGCGCAAGGAGACGGTGCTGGACCTGGC
CAAGTTCGTCGACAAGGGCGTCCAGGTCAAGCTCACCGGCGGCAGGCAAGTTACAGGGACTTTGAAGGGCTATGACCAGC
TTCTAAACTTGGTGCTTGATGAAGCGGTTGAATTTGAAAGAGAGCAAGATGATCCATTGAAACTATCAGGGAAAACCAGA
CAGCTTGGTCTTATTGTCTGTAGGGGTACAGCGGTGATGCTTGTATCGCCAACCGATGGAACNGACGAGATTGCCAACCC
CTTCCAATCTGATGGTGCATAAACCTGCAGGAGCTGATGGTTCTCCTAGTCAAGATCCATGCTCTCCCAGTAGAGAGGCC
TTTGTATTAACTCATGTAATCTGGTGCCACAGTCTCTTATGACTCGTGTCTCTTATGAACACCAGGTGGTGGTCTGTTCT
GTACCACTCGAAACTGATTTCTGAAGATCCTTGCTTTGTGTCAGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12091.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis