Browse Element(s) Details


Os.12116.1.S1_at

Description gb:AK121843.1
DB_XREF= gi:37991466
TID=Os.12116.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12116 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative protein kinase (P0506A10.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033101F17, full insert sequence.
FL= gb:AK121843.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6734011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67310Os.15943.1.S1_at11/111+39393026..39395480Patatin-like phospholipase family protein, expressed
LOC_Os01g67314Os.36852.1.S1_at11/111+39396981..39399517expressed protein
LOC_Os01g67320OsAffx.11770.1.S1_at9/111+39405405..39408990expressed protein
LOC_Os01g67330Os.39420.1.S1_at11/111+39411930..39417878nucleotide-sugar transporter family protein, putative, expressed
LOC_Os01g67330Os.39420.2.S1_at11/111+39411930..39417878nucleotide-sugar transporter family protein, putative, expressed
LOC_Os01g67330Os.39420.2.S1_x_at10/111+39411930..39417878nucleotide-sugar transporter family protein, putative, expressed
LOC_Os01g67340Os.12116.1.S1_at11/111+39418583..39422180Protein kinase domain containing protein, expressed
LOC_Os01g67350OsAffx.11771.1.S1_at11/111+39425858..39428613expressed protein
LOC_Os01g67350Os.39110.1.S1_s_at11/111+39425858..39428613expressed protein
LOC_Os01g67360Os.30516.1.S1_at11/111+39429126..39432613methyltransferase family protein, expressed
LOC_Os01g67364OsAffx.32292.1.A1_at7/111+39441530..39444085hypothetical protein
LOC_Os01g67364OsAffx.30475.4.S1_at3/111+39441530..39444085hypothetical protein
LOC_Os01g67364OsAffx.32280.1.S1_at1/111+39441530..39444085hypothetical protein
LOC_Os01g67364OsAffx.32228.1.A1_x_at1/111+39441530..39444085hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12116.1.S1_at--971--1231Chr01:39419131..39419263 (25 bp)
AGTTGCCAAGCTTGCAGCGGTTGCA
LOC_Os01g67340
Os.12116.1.S1_at--558--5411Chr01:39419088..39419112 (25 bp)
GAAGCTGAGTTTCGCCCAAACATGA
LOC_Os01g67340
Os.12116.1.S1_at--843--8611Chr01:39419057..39419081 (25 bp)
TGGTGAAGGCTTTATCTCCACTGCT
LOC_Os01g67340
Os.12116.1.S1_at--1116--7811Chr01:39418903..39418927 (25 bp)
GGTCATTTTGCATGGCATACCACAG
LOC_Os01g67340
Os.12116.1.S1_at--119--2071Chr01:39418869..39418893 (25 bp)
ACTTGCTTATTGCTTCTCGGAATTC
LOC_Os01g67340
Os.12116.1.S1_at--955--5491Chr01:39418806..39418830 (25 bp)
GAACACGATCCGAGCACAATAACAT
LOC_Os01g67340
Os.12116.1.S1_at--195--4851Chr01:39418770..39418794 (25 bp)
GCAGACGGTGTCTAACAATCGGGAT
LOC_Os01g67340
Os.12116.1.S1_at--875--4951Chr01:39418739..39418763 (25 bp)
GCATATACTGTCATTCTGGGCCAAC
LOC_Os01g67340
Os.12116.1.S1_at--354--8651Chr01:39418723..39418747 (25 bp)
TGGGCCAACCATAGGATTTGCAAGT
LOC_Os01g67340
Os.12116.1.S1_at--288--6231Chr01:39418668..39418692 (25 bp)
GATGGCTTGTGTTCTAGTAGTCGTT
LOC_Os01g67340
Os.12116.1.S1_at--411--291Chr01:39418586..39418610 (25 bp)
ATAGTATCGCTGTTACTTGTGTTGC
LOC_Os01g67340
Target Sequence 
AGTTGCCAAGCTTGCAGCGGTTGCAGCATTGTGCGTACAATACGAAGCTGAGTTTCGCCCAAACATGAGCATTGTGGTGA
AGGCTTTATCTCCACTGCTCACAAGTAAGCNGACTCCACCCGCGCCTCCACCAGCTNTGGACGGTTGATGTNCAGAATCA
TCAGAGAAGAAATANCAACTAAGACCATATAAGCTTCTAAGGGTCAGGGACTATTGTTTTTCCTGCTTGGTCATTTTGCA
TGGCATACCACAGAATGGAGCTACTTGCTTATTGCTTCTCGGAATTCAGGCTAACTGCATGGAGAATGTGTTTTGCCTTT
TGAAGGAACACGATCCGAGCACAATAACATACTTAATTTTTGCAGACGGTGTCTAACAATCGGGATTGCATTGCATATAC
TGTCATTCTGGGCCAACCATAGGATTTGCAAGTATTTAGGTGCCTGTTTACAGAAGATTAGACGATGGCTTGTGTTCTAG
TAGTCGTTTATTCAGTGAACTAGAGATGATGTACTGCTGAATACTGATGATGTTCTTTGATTCAAATAGTATCGCTGTTA
CTTGTGTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12116.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis