Browse Element(s) Details


Os.12117.1.S1_at

Description gb:AK058713.1
DB_XREF= gi:32968731
TID=Os.12117.1
CNT=30
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12117 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023130E21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-019-D09, full insert sequence.
FL= gb:AK072556.1 gb:AK071307.1 gb:AK058713.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5054011/11NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50500OsAffx.3564.1.S1_s_at11/113+28780000..28786002expressed protein
LOC_Os03g50500Os.3075.1.S1_s_at11/113+28780000..28786002expressed protein
LOC_Os03g50510OsAffx.13440.1.S1_at10/113+28788451..28793744Threonine dehydratase biosynthetic, chloroplast precursor, putative, expressed
LOC_Os03g50520OsAffx.13442.2.S1_at11/113+28796019..28801712Dynamin-related protein 1C, putative, expressed
LOC_Os03g50520Os.38545.1.S1_s_at11/113+28796019..28801712Dynamin-related protein 1C, putative, expressed
LOC_Os03g50520Os.9442.1.S1_s_at11/113+28796019..28801712Dynamin-related protein 1C, putative, expressed
LOC_Os03g50530Os.51052.1.S1_at11/113+28801324..28802828expressed protein
LOC_Os03g50540Os.12117.1.S1_at11/113+28804859..28809309NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os03g50550NANA3+28811030..28812067Protein kinase domain containing protein
LOC_Os03g50560Os.5959.1.S1_at11/113+28818239..28822369RRM-containing protein, putative, expressed
LOC_Os03g50570OsAffx.13444.1.S1_at10/113+28824751..28830027expressed protein
LOC_Os03g50570OsAffx.19786.1.S1_at3/113+28824751..28830027expressed protein
LOC_Os03g50570OsAffx.32242.1.S1_at2/113+28824751..28830027expressed protein
LOC_Os03g50570OsAffx.32330.1.S1_x_at2/113+28824751..28830027expressed protein
LOC_Os03g50570OsAffx.23830.1.S1_at1/113+28824751..28830027expressed protein
LOC_Os03g50570Os.29056.1.S1_s_at1/113+28824751..28830027expressed protein
LOC_Os03g50580NANA3+28831688..28832032expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0003954molecular_functionNADH dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12117.1.S1_at--391--3271Chr03:28805441..28805465 (25 bp)
CAACTTCCTTATGATAGCCTCTCAG
LOC_Os03g50540
Os.12117.1.S1_at--720--5991Chr03:28805366..28805390 (25 bp)
GAGAGGGAGCCGTGCACTATTTCCT
LOC_Os03g50540
Os.12117.1.S1_at--716--191Chr03:28805348..28805372 (25 bp)
ATTTCCTCTGAAGTGAAGCCTCCGG
LOC_Os03g50540
Os.12117.1.S1_at--996--5411Chr03:28805334..28805358 (25 bp)
GAAGCCTCCGGTAAAGCAACAAGTG
LOC_Os03g50540
Os.12117.1.S1_at--264--5911Chr03:28805310..28805334 (25 bp)
GAGCTCTACTCCATTCAAAACTGTT
LOC_Os03g50540
Os.12117.1.S1_at--1014--6451Chr03:28805241..28805265 (25 bp)
GATAATGGCCCAATGCAGTGCAACC
LOC_Os03g50540
Os.12117.1.S1_at--383--1731Chr03:28805194..28805218 (25 bp)
ACCTTTCGGAAGCTATTCATCGGCA
LOC_Os03g50540
Os.12117.1.S1_at--827--10791Chr03:28805152..28805176 (25 bp)
TTGTTTTTGCTCCAAATTTCCCCAG
LOC_Os03g50540
Os.12117.1.S1_at--765--2251Chr03:28805139..28805163 (25 bp)
AAATTTCCCCAGTTGTTGCATGCTT
LOC_Os03g50540
Os.12117.1.S1_at--466--2711Chr03:28805012..28805036 (25 bp)
AAGCTTGTTGTCCTTCTGAATCATG
LOC_Os03g50540
Os.12117.1.S1_at--964--10791Chr03:28804966..28804990 (25 bp)
TTGTTCCTTTTTAGTTCTTGCTCTG
LOC_Os03g50540
Target Sequence 
CAACTTCCTTATGATAGCCTCTCAGGTGTGANGGGACCGGATTAGCATGGTAGCACCAAACCTTGTGCATGTAGATGAGA
GGGAGCCGTGCACTATTTCCTCTGAAGTGAAGCCTCCGGTAAAGCAACAAGTGAGCTCTACTCCATTCAAAACTGTTGTG
GAGAACTTCTATATGACTGATGCAATCACAAGAGCCTCAAAGATAATGGCCCAATGCAGTGCAACCTTGTTGAAGAAGTG
AAATCTACACCTTTCGGAAGCTATTCATCGGCAGAAAAGATTTTAGTTCCTTGTTTTTGCTCCAAATTTCCCCAGTTGTT
GCATGCTTGGTTGGAAATTGGAGTATAATTTGGACTGCCCTTAGATTTGAAGAGCAGCAAAACTTGGTCTGTGAATTTTT
CTTGTGTATGAGAAGCAGAGCATACTCAATAAGCTTGTTGTCCTTCTGAATCATGCAACAGCCACAGGCAATAATTTTGT
TCCTTTTTAGTTCTTGCTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12117.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis