Browse Element(s) Details


Os.12118.1.A1_a_at

Description gb:AK105695.1
DB_XREF= gi:32990904
TID=Os.12118.1
CNT=17
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.12118 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-201-C09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-201-C09, full insert sequence.
FL= gb:AK105695.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4793011/11thiol oxidoreductase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g47870Os.54069.1.S1_at10/115+27366036..27371699expressed protein
LOC_Os05g47870Os.50619.1.S1_x_at1/115+27366036..27371699expressed protein
LOC_Os05g47880Os.5255.1.S1_at11/115+27374195..27375476Galactosyltransferase family protein, expressed
LOC_Os05g47890Os.8991.1.S1_at11/115+27376091..27378590Guanine nucleotide-binding protein beta subunit, putative, expressed
LOC_Os05g47900Os.55141.1.S1_at11/115+27379989..27382026Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g47910NANA5+27382768..27383739retrotransposon protein, putative, unclassified
LOC_Os05g47920Os.46785.2.S1_x_at2/115+27384318..27390180retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g47920OsAffx.30226.2.S1_x_at1/115+27384318..27390180retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g47920OsAffx.442.1.S1_x_at1/115+27384318..27390180retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g47930Os.12118.1.A1_a_at11/115+27390831..27395793thiol oxidoreductase, putative, expressed
LOC_Os05g47940OsAffx.4649.1.S1_x_at11/115+27399021..27400858transposon protein, putative, unclassified, expressed
LOC_Os05g47940OsAffx.4649.1.S1_at11/115+27399021..27400858transposon protein, putative, unclassified, expressed
LOC_Os05g47950Os.55729.1.S1_at11/115+27402540..27404322UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os05g47960OsAffx.15140.1.S1_at11/115+27415529..27416301expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12118.1.A1_a_at--715--7971Chr05:27391534..27391558 (25 bp)
GGATGCAGTGTATCAATTCTTGGTT
LOC_Os05g47930
Os.12118.1.A1_a_at--1021--5831Chr05:27391471..27391495 (25 bp)
GACCTACATGGAGTCTCTTCAGCAA
LOC_Os05g47930
Os.12118.1.A1_a_at--712--7931Chr05:27391423..27391447 (25 bp)
GGATTCATCGATTTCTAATGCTGCA
LOC_Os05g47930
Os.12118.1.A1_a_at--631--3011Chr05:27391407..27391431 (25 bp)
AATGCTGCAAGCGTCCCAATTGGAG
LOC_Os05g47930
Os.12118.1.A1_a_at--749--1591Chr05:27391384..27391408 (25 bp)
AGCTGCCCTGGGTGTTGCGATTGCC
LOC_Os05g47930
Os.12118.1.A1_a_at--351--3031Chr05:27391057..27391081 (25 bp)
AATCTTGGTAAGTGCTCCAAACAGT
LOC_Os05g47930
Os.12118.1.A1_a_at--500--2971Chr05:27391021..27391045 (25 bp)
AATGGTCGGGCAGTCAGTTACAGAT
LOC_Os05g47930
Os.12118.1.A1_a_at--1154--2531Chr05:27390970..27390994 (25 bp)
AACTCAAGTGTATTTTTTGTGCAAC
LOC_Os05g47930
Os.12118.1.A1_a_at--444--10411Chr05:27390956..27390980 (25 bp)
TTTTGTGCAACGATGTGAGCTTTGT
LOC_Os05g47930
Os.12118.1.A1_a_at--147--7391Chr05:27390942..27390966 (25 bp)
GTGAGCTTTGTTGCATCATGTCATA
LOC_Os05g47930
Os.12118.1.A1_a_at--259--7751Chr05:27390876..27390900 (25 bp)
GGTGTATACGTTCGGATGTTACTAT
LOC_Os05g47930
Target Sequence 
GGATGCAGTGTATCAATTCTTGGTTAACTACTATGGAAAGAAGCTTGTATCATCCTACAAGGAGACCTACATGGAGTCTC
TTCAGCAACAAGAGAAGAAGATAGTTTCAGAGGATTCATCGATTTCTAATGCTGCAAGCGTCCCAATTGGAGCTGCCCTG
GGTGTTGCGATTGCCAGCTGTACATTTGGGGCGCTGGCTTGCTTCTGGAGGGCCCAGCAGAAGAACAGAAAGCAAAGAAA
GAACTGGAACTGAAAAATAGCCTACCAGTTGCTCACCCTGCACTTCATCAGAGGGGCTCATCAATGAATGTGTATTTTTC
TGNACGGATTAAAATCTTGGTAAGTGCTCCAAACAGTGTGGGAAAGGAAATGGTCGGGCAGTCAGTTACAGATGAAAAAC
TCACAGAAGTACGATGATTAACTCAAGTGTATTTTTTGTGCAACGATGTGAGCTTTGTTGCATCATGTCATAGATCAACG
TGTAATAGTTTGACATATAGATTTCGGATGATTGGTGTATACGTTCGGATGTTACTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12118.1.A1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis