Browse Element(s) Details


Os.54069.1.S1_at

Description gb:AK101673.1
DB_XREF= gi:32986882
TID=Os.54069.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.54069 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033058D22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033058D22, full insert sequence.
FL= gb:AK101673.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4787010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g47840Os.53178.1.S1_s_at11/115+27339718..27341524IPP transferase family protein, expressed
LOC_Os05g47840Os.53178.1.S1_at11/115+27339718..27341524IPP transferase family protein, expressed
LOC_Os05g47850OsAffx.4648.1.S1_at11/115+27357615..27362616CRS1/YhbY domain containing protein, expressed
LOC_Os05g47860OsAffx.27361.1.S1_at11/115+27363830..27364111hypothetical protein
LOC_Os05g47870Os.54069.1.S1_at10/115+27366036..27371699expressed protein
LOC_Os05g47870Os.50619.1.S1_x_at1/115+27366036..27371699expressed protein
LOC_Os05g47880Os.5255.1.S1_at11/115+27374195..27375476Galactosyltransferase family protein, expressed
LOC_Os05g47890Os.8991.1.S1_at11/115+27376091..27378590Guanine nucleotide-binding protein beta subunit, putative, expressed
LOC_Os05g47900Os.55141.1.S1_at11/115+27379989..27382026Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g47910NANA5+27382768..27383739retrotransposon protein, putative, unclassified
LOC_Os05g47920Os.46785.2.S1_x_at2/115+27384318..27390180retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g47920OsAffx.30226.2.S1_x_at1/115+27384318..27390180retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g47920OsAffx.442.1.S1_x_at1/115+27384318..27390180retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g47930Os.12118.1.A1_a_at11/115+27390831..27395793thiol oxidoreductase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54069.1.S1_at--344--7711Chr05:27366581..27366605 (25 bp)
GGGTGGTGTTCCTGTGTACCATGAA
LOC_Os05g47870
Os.54069.1.S1_at--1121--1151Chr05:27366533..27366557 (25 bp)
AGTAACAAAGCCTGATCTTGCCGCC
LOC_Os05g47870
Os.54069.1.S1_at--233--8011Chr05:27366499..27366523 (25 bp)
GGAGGACTTGAAGGTCAGTTCCCAA
LOC_Os05g47870
Os.54069.1.S1_at--837--7111Chr05:27366486..27366510 (25 bp)
GTCAGTTCCCAAGCATCAAGGCGAT
LOC_Os05g47870
Os.54069.1.S1_at--903--3191Chr05:27366444..27366468 (25 bp)
CAATGAGCAAGGTTCGGCCGTGTCA
LOC_Os05g47870
Os.54069.1.S1_at--232--2911NONE
AAGGTTCGGCCGTGTCAGCAAGAGA
NONE
Os.54069.1.S1_at--949--6031Chr05:27366379..27366398 (20 bp)
GAGATCCTGATCACGTACAGTTTTT
LOC_Os05g47870
Os.54069.1.S1_at--956--4271Chr05:27366344..27366368 (25 bp)
CCTGTTTTTTGTTCTGTGTAATGTA
LOC_Os05g47870
Os.54069.1.S1_at--404--7451Chr05:27366329..27366353 (25 bp)
GTGTAATGTAGACTGGGCTGCCCTC
LOC_Os05g47870
Os.54069.1.S1_at--723--1531Chr05:27366230..27366254 (25 bp)
AGCTTGGACTCCCTAATCCTCTTAA
LOC_Os05g47870
Os.54069.1.S1_at--17--571Chr05:27366215..27366239 (25 bp)
ATCCTCTTAATCTCTTGGCATCTAT
LOC_Os05g47870
Target Sequence 
GGGTGGTGTTCCTGTGTACCATGAAGATGATCATGATCAGAGGAAGGAAGTAACAAAGCCTGATCTTGCCGCCGGTGACT
CCGGAGGACTTGAAGGTCAGTTCCCAAGCATCAAGGCGATGGCGATGATGGGACGAGCAATGAGCAAGGTTCGGCCGTGT
CAGCAAGAGAGGAGGGGATCCTTCATGGTGTGGAAGGCGTAGTAGGAGAGATCCTGATCACGTACAGTTTTTTTTTTNNN
NCCTGTTTTTTGTTCTGTGTAATGTAGACTGGGCTGCCCTCTCTCCTCCCGTGGCAGCTGGCTTCAGATCCNGTGGCTAT
CTTATAGGGTATGTTTACCAAAGTATCTTNGTGCCAGCTTGGACTCCCTAATCCTCTTAATCTCTTGGCATCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54069.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis