Browse Element(s) Details


OsAffx.27361.1.S1_at

Description tigr:9633.m04460
TID=OsAffx.27361.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4786011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g47840Os.53178.1.S1_s_at11/115+27339718..27341524IPP transferase family protein, expressed
LOC_Os05g47840Os.53178.1.S1_at11/115+27339718..27341524IPP transferase family protein, expressed
LOC_Os05g47850OsAffx.4648.1.S1_at11/115+27357615..27362616CRS1/YhbY domain containing protein, expressed
LOC_Os05g47860OsAffx.27361.1.S1_at11/115+27363830..27364111hypothetical protein
LOC_Os05g47870Os.54069.1.S1_at10/115+27366036..27371699expressed protein
LOC_Os05g47870Os.50619.1.S1_x_at1/115+27366036..27371699expressed protein
LOC_Os05g47880Os.5255.1.S1_at11/115+27374195..27375476Galactosyltransferase family protein, expressed
LOC_Os05g47890Os.8991.1.S1_at11/115+27376091..27378590Guanine nucleotide-binding protein beta subunit, putative, expressed
LOC_Os05g47900Os.55141.1.S1_at11/115+27379989..27382026Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g47910NANA5+27382768..27383739retrotransposon protein, putative, unclassified
LOC_Os05g47920Os.46785.2.S1_x_at2/115+27384318..27390180retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g47920OsAffx.30226.2.S1_x_at1/115+27384318..27390180retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g47920OsAffx.442.1.S1_x_at1/115+27384318..27390180retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27361.1.S1_at--410--9531Chr05:27364065..27364089 (25 bp)
TCTACGGACTACTCGCGCTGCTCGG
LOC_Os05g47860
OsAffx.27361.1.S1_at--513--7651Chr05:27363952..27363976 (25 bp)
GGGATGATAGCACTGCTGCTGTCCC
LOC_Os05g47860
OsAffx.27361.1.S1_at--811--711Chr05:27363949..27363973 (25 bp)
ATGATAGCACTGCTGCTGTCCCCGT
LOC_Os05g47860
OsAffx.27361.1.S1_at--811--291Chr05:27363946..27363970 (25 bp)
ATAGCACTGCTGCTGTCCCCGTACG
LOC_Os05g47860
OsAffx.27361.1.S1_at--330--4591Chr05:27363919..27363943 (25 bp)
GCGCAGCCATTGTTCCCGGTTGCAA
LOC_Os05g47860
OsAffx.27361.1.S1_at--1000--5051Chr05:27363917..27363941 (25 bp)
GCAGCCATTGTTCCCGGTTGCAACT
LOC_Os05g47860
OsAffx.27361.1.S1_at--562--31Chr05:27363911..27363935 (25 bp)
ATTGTTCCCGGTTGCAACTACTGCC
LOC_Os05g47860
OsAffx.27361.1.S1_at--325--2531Chr05:27363896..27363920 (25 bp)
AACTACTGCCAATCTCGCCGTGGAG
LOC_Os05g47860
OsAffx.27361.1.S1_at--229--2031Chr05:27363895..27363919 (25 bp)
ACTACTGCCAATCTCGCCGTGGAGA
LOC_Os05g47860
OsAffx.27361.1.S1_at--1052--5971Chr05:27363874..27363898 (25 bp)
GAGAAACTGAAGCATCGCTTCTCCA
LOC_Os05g47860
OsAffx.27361.1.S1_at--339--2391Chr05:27363871..27363895 (25 bp)
AAACTGAAGCATCGCTTCTCCAACC
LOC_Os05g47860
Target Sequence 
TCTACGGACTACTCGCGCTGCTCGGCGCGTCGGTGGTGGTGTGGTCCGTCGCCGGCAAGCCGCCCGCCGCCCACGCCGGG
CACGCACTCGCCGGCTTCCTGCTTTGGCTGCTGGGGATGATAGCACTGCTGCTGTCCCCGTACGCCGCGCAGCCATTGTT
CCCGGTTGCAACTACTGCCAATCTCGCCGTGGAGAAACTGAAGCATCGCTTCTCCAACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27361.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis