Browse Element(s) Details


Os.53178.1.S1_s_at

Description gb:AK071216.1
DB_XREF= gi:32981239
TID=Os.53178.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53178 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-129-B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023083F11, full insert sequence.
FL= gb:AK071216.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4784011/11IPP transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g47810OsAffx.15139.1.S1_x_at10/115+27320305..27321335hypothetical protein
LOC_Os05g47820Os.16042.1.S1_at11/115+27329015..27331097expressed protein
LOC_Os05g47820Os.16042.1.S2_at11/115+27329015..27331097expressed protein
LOC_Os05g47830OsAffx.27360.1.S1_s_at11/115+27334665..27335802expressed protein
LOC_Os05g47830OsAffx.30025.1.S1_x_at1/115+27334665..27335802expressed protein
LOC_Os05g47840Os.53178.1.S1_s_at11/115+27339718..27341524IPP transferase family protein, expressed
LOC_Os05g47840Os.53178.1.S1_at11/115+27339718..27341524IPP transferase family protein, expressed
LOC_Os05g47850OsAffx.4648.1.S1_at11/115+27357615..27362616CRS1/YhbY domain containing protein, expressed
LOC_Os05g47860OsAffx.27361.1.S1_at11/115+27363830..27364111hypothetical protein
LOC_Os05g47870Os.54069.1.S1_at10/115+27366036..27371699expressed protein
LOC_Os05g47870Os.50619.1.S1_x_at1/115+27366036..27371699expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009691biological_processcytokinin biosynthesis
GO:0009824molecular_functionadenylate dimethylallyltransferase activity
GO:0016765molecular_functiontransferase activity, transferring alkyl or aryl (other than methyl) groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53178.1.S1_s_at--265--4551Chr05:27339992..27340016 (25 bp)
GCCCTTCTCTGACACTGCTCGGTGG
LOC_Os05g47840
Os.53178.1.S1_s_at--506--2171Chr05:27339981..27340005 (25 bp)
ACACTGCTCGGTGGGCCCAGAAAAA
LOC_Os05g47840
Os.53178.1.S1_s_at--497--2871Chr05:27339880..27339904 (25 bp)
AAGTGTTCTTCTTCATTGCAGCAGA
LOC_Os05g47840
Os.53178.1.S1_s_at--164--9051Chr05:27339864..27339888 (25 bp)
TGCAGCAGAATTTGTGTACTCTTTC
LOC_Os05g47840
Os.53178.1.S1_s_at--774--3611Chr05:27339840..27339864 (25 bp)
CTTGGAGAGGTGGTGATTCATCACA
LOC_Os05g47840
Os.53178.1.S1_s_at--1082--8611Chr05:27339830..27339854 (25 bp)
TGGTGATTCATCACATCGCTCTCCT
LOC_Os05g47840
Os.53178.1.S1_s_at--790--9251Chr05:27339806..27339830 (25 bp)
TCCTAACCGCGGCACTGTATGTATG
LOC_Os05g47840
Os.53178.1.S1_s_at--429--2611Chr05:27339802..27339826 (25 bp)
AACCGCGGCACTGTATGTATGTAGT
LOC_Os05g47840
Os.53178.1.S1_s_at--587--1111Chr05:27339780..27339804 (25 bp)
AGTGAGTAGTACTAATCATCTAATT
LOC_Os05g47840
Os.53178.1.S1_s_at--729--411Chr05:27339766..27339790 (25 bp)
ATCATCTAATTATCCACCGTGTTCA
LOC_Os05g47840
Os.53178.1.S1_s_at--196--10131Chr05:27339756..27339780 (25 bp)
TATCCACCGTGTTCAGAATTTTGAG
LOC_Os05g47840
Target Sequence 
GCCCTTCTCTGACACTGCTCGGTGGGCCCAGAAAAAGTAGCCAGTGACATAGAAAGAAGAGACAAAGGTAATTAACGTAG
AGAGAGAGAAGCTAAGCTATGCAACTGATGAGAAGTGTTCTTCTTCATTGCAGCAGAATTTGTGTACTCTTTCTTGGAGA
GGTGGTGATTCATCACATCGCTCTCCTCCTAACCGCGGCACTGTATGTATGTAGTGAGTAGTACTAATCATCTAATTATC
CACCGTGTTCAGAATTTTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53178.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis