Browse Element(s) Details


OsAffx.27360.1.S1_s_at

Description tigr:9633.m04457
TID=OsAffx.27360.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4783011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g47810OsAffx.15139.1.S1_x_at10/115+27320305..27321335hypothetical protein
LOC_Os05g47820Os.16042.1.S1_at11/115+27329015..27331097expressed protein
LOC_Os05g47820Os.16042.1.S2_at11/115+27329015..27331097expressed protein
LOC_Os05g47830OsAffx.27360.1.S1_s_at11/115+27334665..27335802expressed protein
LOC_Os05g47830OsAffx.30025.1.S1_x_at1/115+27334665..27335802expressed protein
LOC_Os05g47840Os.53178.1.S1_s_at11/115+27339718..27341524IPP transferase family protein, expressed
LOC_Os05g47840Os.53178.1.S1_at11/115+27339718..27341524IPP transferase family protein, expressed
LOC_Os05g47850OsAffx.4648.1.S1_at11/115+27357615..27362616CRS1/YhbY domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27360.1.S1_s_at--30--5931Chr05:27335241..27335365 (25 bp)
GAGCTTGATCGGCTGTATCCCGGAT
LOC_Os05g47830
OsAffx.27360.1.S1_s_at--1052--8751Chr05:27335354..27335378 (25 bp)
TGTATCCCGGATTATCGCTGGCGGA
LOC_Os05g47830
OsAffx.27360.1.S1_s_at--477--4691Chr05:27335374..27335398 (25 bp)
GCGGACGTGAACCTGGATTCGTACA
LOC_Os05g47830
OsAffx.27360.1.S1_s_at--423--6011Chr05:27335531..27335555 (25 bp)
GAGAGCAACTTTTCAGATGTTCCCA
LOC_Os05g47830
OsAffx.27360.1.S1_s_at--335--1291Chr05:27335545..27335569 (25 bp)
AGATGTTCCCATGTTTTGCTTTTTT
LOC_Os05g47830
OsAffx.27360.1.S1_s_at--807--5731Chr05:27335577..27335601 (25 bp)
GACGGCTAACATGTCCATCCAATAA
LOC_Os05g47830
OsAffx.27360.1.S1_s_at--830--711Chr05:27335604..27335628 (25 bp)
ATGTTGGTTCTTCTAGATCAGAGGA
LOC_Os05g47830
OsAffx.27360.1.S1_s_at--616--3051Chr05:27335685..27335709 (25 bp)
AATCGTATGCGATGTTTGTGCCCTG
LOC_Os05g47830
OsAffx.27360.1.S1_s_at--450--9171Chr05:27335703..27335727 (25 bp)
TGCCCTGTGGCATATGTGGTGTGAT
LOC_Os05g47830
OsAffx.27360.1.S1_s_at--91--10251Chr05:27335729..27335753 (25 bp)
TTTGGTTAGCTGTCATGTTATGTAC
LOC_Os05g47830
OsAffx.27360.1.S1_s_at--361--6791Chr05:27335745..27335769 (25 bp)
GTTATGTACATGGTTTCAGTCTGTG
LOC_Os05g47830
Target Sequence 
GAGCTTGATCGGCTGTATCCCGGATTATCGCTGGCGGACGTGAACCTGGATTCGTACAAGATCGTCGAGGAGAGGTGATT
GGCGCCAGCGCGGTGAAGTCTGCAAATGAGAGCAACTTTTCAGATGTTCCCATGTTTTGCTTTTTTTTCTTCTGACGGCT
AACATGTCCATCCAATAATTATGTTGGTTCTTCTAGATCAGAGGATGGATATAGATTTTATGGTTGATTGTGAATAGGTT
TTCTAATTAGAAGAAAGGTGGAATCGTATGCGATGTTTGTGCCCTGTGGCATATGTGGTGTGATGTTTGGTTAGCTGTCA
TGTTATGTACATGGTTTCAGTCTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27360.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis