Browse Element(s) Details


OsAffx.15139.1.S1_x_at

Description tigr:9633.m04455
TID=OsAffx.15139.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4781010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g47780Os.19172.1.S1_at11/115+27294266..27298959CHY zinc finger family protein, expressed
LOC_Os05g47780OsAffx.27359.1.S1_x_at10/115+27294266..27298959CHY zinc finger family protein, expressed
LOC_Os05g47790Os.47956.1.S1_at11/115+27300132..27303737expressed protein
LOC_Os05g47799NANA5+27305791..27307255NA
LOC_Os05g47810OsAffx.15139.1.S1_x_at10/115+27320305..27321335hypothetical protein
LOC_Os05g47820Os.16042.1.S1_at11/115+27329015..27331097expressed protein
LOC_Os05g47820Os.16042.1.S2_at11/115+27329015..27331097expressed protein
LOC_Os05g47830OsAffx.27360.1.S1_s_at11/115+27334665..27335802expressed protein
LOC_Os05g47830OsAffx.30025.1.S1_x_at1/115+27334665..27335802expressed protein
LOC_Os05g47840Os.53178.1.S1_s_at11/115+27339718..27341524IPP transferase family protein, expressed
LOC_Os05g47840Os.53178.1.S1_at11/115+27339718..27341524IPP transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15139.1.S1_x_at--794--9391NONE
TCGTCGTTGGCGAGGATCCCTTCGA
NONE
OsAffx.15139.1.S1_x_at--444--1591Chr05:27321031..27321055 (25 bp)
AGCTCCGGGTTAAGCTCATGGGCCA
LOC_Os05g47810
OsAffx.15139.1.S1_x_at--1109--7531Chr05:27321025..27321049 (25 bp)
GGGTTAAGCTCATGGGCCACCTACG
LOC_Os05g47810
OsAffx.15139.1.S1_x_at--426--2691Chr05:27321020..27321044 (25 bp)
AAGCTCATGGGCCACCTACGAGACG
LOC_Os05g47810
OsAffx.15139.1.S1_x_at--627--2651Chr05:27320915..27320939 (25 bp)
AAGCCCGAGAGCCTACCCGCGGAGG
LOC_Os05g47810
OsAffx.15139.1.S1_x_at--692--892Chr05:27320893..27320917 (25 bp)
AGGCGGACTCGGAGCCCGAGCTCAA
LOC_Os05g47810
OsAffx.15139.1.S1_x_at--713--1671Chr05:27320821..27320845 (25 bp)
AGCCGCAAGCCGACGGTGCAGCGAG
LOC_Os05g47810
OsAffx.15139.1.S1_x_at--68--3391Chr05:27320803..27320827 (25 bp)
CAGCGAGGCCGTGGAACCTTCGGCA
LOC_Os05g47810
OsAffx.15139.1.S1_x_at--463--4251Chr05:27320795..27320819 (25 bp)
CCGTGGAACCTTCGGCAGCGGACGC
LOC_Os05g47810
OsAffx.15139.1.S1_x_at--1021--6171Chr05:27320651..27320675 (25 bp)
GAGGACATCTACGCGCTGACCGGCT
LOC_Os05g47810
OsAffx.15139.1.S1_x_at--143--8791Chr05:27320342..27320366 (25 bp)
TGTTCCCTGGGTTGTGGCTGACGGA
LOC_Os05g47810
Target Sequence 
TCGTCGTTGGCGAGGATCCCTTCGACGGTGGGATCGAGGAGCTCCGGGTTAAGCTCATGGGCCACCTACGAGACGCCGCC
GACCGTCTCCGCGTGCCCCAGCCTAGCCCCCCACCCCCGCCGCCTCCGCCGCCGCCGCCGCCGACGACGACGACGAAGCC
CGAGAGCCTACCCGCGGAGGCGGACTCGGAGCCCGAGCTCAAGGCGCCGCCTCCGCCTCCGCCTCCGCCTCCACTTCTCC
CCATGGCGCAGCCGCAAGCCGACGGTGCAGCGAGGCCGTGGAACCTTCGGCAGCGGACGCGGCGGCGCCCAGCCGCCTCC
ATGTCGTGGGCGGCGGCGGCGGCGGTGCCGGTGCCGTCGTCGTCGCGGCGCCGGAAGCGCGCGCCGTTCTCGGTGGCGCT
CACGCCGGAGGAGATCGAGGAGGACATCTACGCGCTGACCGGCTCACGGCCGCGGCGGCGGCCGAGGAAGCGGCCGCGCG
TCGTACAGCGGCAGCTCGATTCGCTGTTCCCTGGGTTGTGGCTGACGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15139.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis