Browse Element(s) Details


Os.19172.1.S1_at

Description gb:AK068028.1
DB_XREF= gi:32978046
TID=Os.19172.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.19172 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 31185 putative zinc finger protein mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013131L14, full insert sequence.
FL= gb:AK068028.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4778011/11CHY zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g47750OsAffx.27357.2.S1_at11/115+27270255..27272647expressed protein
LOC_Os05g47760NANA5+27273439..27274317expressed protein
LOC_Os05g47770OsAffx.27357.1.S1_at11/115+27277679..27284205Protein kinase domain containing protein, expressed
LOC_Os05g47770OsAffx.25952.1.S1_s_at1/115+27277679..27284205Protein kinase domain containing protein, expressed
LOC_Os05g47780Os.19172.1.S1_at11/115+27294266..27298959CHY zinc finger family protein, expressed
LOC_Os05g47780OsAffx.27359.1.S1_x_at10/115+27294266..27298959CHY zinc finger family protein, expressed
LOC_Os05g47790Os.47956.1.S1_at11/115+27300132..27303737expressed protein
LOC_Os05g47799NANA5+27305791..27307255NA
LOC_Os05g47810OsAffx.15139.1.S1_x_at10/115+27320305..27321335hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19172.1.S1_at--298--1131Chr05:27298053..27298077 (25 bp)
AGTGCAACTGTTGCCTGGGCATGAA
LOC_Os05g47780
Os.19172.1.S1_at--335--6691Chr05:27298062..27298086 (25 bp)
GTTGCCTGGGCATGAAATTGATAGA
LOC_Os05g47780
Os.19172.1.S1_at--75--8111Chr05:27298583..27298684 (25 bp)
GGACCGGTGCCAGGATATACTTTGT
LOC_Os05g47780
Os.19172.1.S1_at--716--5311Chr05:27298704..27298728 (25 bp)
GAAGGTCTCGGTTCCATTGGCTGTA
LOC_Os05g47780
Os.19172.1.S1_at--1085--11Chr05:27298719..27298743 (25 bp)
ATTGGCTGTATCACAAATGCGGCTT
LOC_Os05g47780
Os.19172.1.S1_at--855--6751Chr05:27298791..27298815 (25 bp)
GTTCAACATCAGATTAACCAGGCGA
LOC_Os05g47780
Os.19172.1.S1_at--12--131Chr05:27298803..27298827 (25 bp)
ATTAACCAGGCGAGATTTTCCCTCT
LOC_Os05g47780
Os.19172.1.S1_at--586--6051Chr05:27298814..27298838 (25 bp)
GAGATTTTCCCTCTCATATTCGAAA
LOC_Os05g47780
Os.19172.1.S1_at--1035--1411Chr05:27298883..27298907 (25 bp)
AGAAATCCATGCGTCATGCGTGCTC
LOC_Os05g47780
Os.19172.1.S1_at--864--9091Chr05:27298903..27298927 (25 bp)
TGCTCTTGTGTGTTGCTGCGATTAA
LOC_Os05g47780
Os.19172.1.S1_at--1120--6671Chr05:27298914..27298938 (25 bp)
GTTGCTGCGATTAACAAGTCATAGG
LOC_Os05g47780
Target Sequence 
AGTGCAACTGTTGCCTGGGCATGAAATTGATAGAGCATAAATGTCGAGAAAAGATGCTAGAGATGAATTGCCCAATNTGC
TGCGACTTCCTATTTACATCGAGTGCAGCAGTTAAAGGTNTACCTTGTGGCCATTTCATGCATTCAGCTTGCTTTCAGGC
GTACACCTGTAGTCACTACACCTGNCCAATNTGCTNTAAATCCNTTGGGAGATATGACAGTATACTTTGGCATGCTTGAT
GGCTTGCTGGNCCGCAGAAGAGCTTCCNTGAGGAATACCGGGACCGGTGCCAGGATATACTTTGTAACGATTGTGAAAGA
AAAGGAAGGTCTCGGTTCCATTGGCTGTATCACAAATGCGGCTTNTGCGGTTCATATAACACNTAGAGTTATCAAGATTG
ATAGAGCTGATTGTTCAACATCAGATTAACCAGGCGAGATTTTCCCTCTCATATTCGAAATTCCTTTTGAATATATATAT
TGTTGTAAATATACATCAACTTAAAGAAATCCATGCGTCATGCGTGCTCTTGTGTGTTGCTGCGATTAACAAGTCATAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19172.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis