Browse Element(s) Details


OsAffx.27357.1.S1_at

Description tigr:9633.m04450
TID=OsAffx.27357.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4777011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g47710NANA5+27249002..27254125transposon protein, putative, Mutator sub-class
LOC_Os05g47720Os.35344.3.S1_x_at10/115+27256760..27259473hypothetical protein
LOC_Os05g47720Os.35344.18.S1_x_at9/115+27256760..27259473hypothetical protein
LOC_Os05g47720OsAffx.22940.2.S1_s_at6/115+27256760..27259473hypothetical protein
LOC_Os05g47720OsAffx.22940.3.S1_x_at5/115+27256760..27259473hypothetical protein
LOC_Os05g47720OsAffx.22940.5.S1_x_at4/115+27256760..27259473hypothetical protein
LOC_Os05g47720OsAffx.32051.1.S1_x_at1/115+27256760..27259473hypothetical protein
LOC_Os05g47720OsAffx.22940.1.S1_s_at1/115+27256760..27259473hypothetical protein
LOC_Os05g47730Os.6274.1.S1_at4/115+27262527..27262817nonspecific lipid-transfer protein AKCS9 precursor, putative, expressed
LOC_Os05g47740OsAffx.19542.3.S1_x_at7/115+27264843..27269065retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g47750OsAffx.27357.2.S1_at11/115+27270255..27272647expressed protein
LOC_Os05g47760NANA5+27273439..27274317expressed protein
LOC_Os05g47770OsAffx.27357.1.S1_at11/115+27277679..27284205Protein kinase domain containing protein, expressed
LOC_Os05g47770OsAffx.25952.1.S1_s_at1/115+27277679..27284205Protein kinase domain containing protein, expressed
LOC_Os05g47780Os.19172.1.S1_at11/115+27294266..27298959CHY zinc finger family protein, expressed
LOC_Os05g47780OsAffx.27359.1.S1_x_at10/115+27294266..27298959CHY zinc finger family protein, expressed
LOC_Os05g47790Os.47956.1.S1_at11/115+27300132..27303737expressed protein
LOC_Os05g47799NANA5+27305791..27307255NA

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Gene Ontology Classification
GO idTypeName
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27357.1.S1_at--565--9211Chr05:27283734..27283758 (25 bp)
TCCAGAGGTGCCAGGTGGACCAGCT
LOC_Os05g47770
OsAffx.27357.1.S1_at--1136--7331Chr05:27283967..27283991 (25 bp)
GTGCACGCGCCATGGGACAGCATGA
LOC_Os05g47770
OsAffx.27357.1.S1_at--366--7631Chr05:27283980..27284004 (25 bp)
GGGACAGCATGAGCACGACGCCGAA
LOC_Os05g47770
OsAffx.27357.1.S1_at--98--5811Chr05:27283996..27284020 (25 bp)
GACGCCGAACACTAGCCAGTAACCT
LOC_Os05g47770
OsAffx.27357.1.S1_at--435--1171Chr05:27284013..27284037 (25 bp)
AGTAACCTCTCTGTCGATCGAGATT
LOC_Os05g47770
OsAffx.27357.1.S1_at--533--6391Chr05:27284028..27284052 (25 bp)
GATCGAGATTCGCTTGTTTTGTACC
LOC_Os05g47770
OsAffx.27357.1.S1_at--644--6571Chr05:27284034..27284058 (25 bp)
GATTCGCTTGTTTTGTACCGGACAG
LOC_Os05g47770
OsAffx.27357.1.S1_at--1148--6971Chr05:27284048..27284072 (25 bp)
GTACCGGACAGCGTACTGATTTTTT
LOC_Os05g47770
OsAffx.27357.1.S1_at--1103--10351Chr05:27284070..27284094 (25 bp)
TTTTTCCTGCCGGTTTGATGTAAAT
LOC_Os05g47770
OsAffx.27357.1.S1_at--648--231Chr05:27284108..27284132 (25 bp)
ATATCTTTGAAACAGCGGAAATGAC
LOC_Os05g47770
OsAffx.27357.1.S1_at--686--2031Chr05:27284148..27284172 (25 bp)
ACTTCTGAAGTTGTGATAGCGTTTG
LOC_Os05g47770
Target Sequence 
TCCAGAGGTGCCAGGTGGACCAGCTGGTGGACGACGAGCTCGGGTACAGCTCCGACGAGGCGACGAGGAAGACGATGACC
ATGGTCGCCGAGCTCGCGTTCCGGTGCCTGCAGCACAACGGCGAGATGCGGCCGCCGATCAAGGAGGTGGCCGACGTCCT
CCGGGGAATCCAGGACGAGTGCAGGGCGGCGGAGAAAGGCGGCAAGAGGGGCTCGCCGTGCTCGCCCAACACCGTGCACG
CGCCATGGGACAGCATGAGCACGACGCCGAACACTAGCCAGTAACCTCTCTGTCGATCGAGATTCGCTTGTTTTGTACCG
GACAGCGTACTGATTTTTTTTCCTGCCGGTTTGATGTAAATTATGTTATTTTATATATCTTTGAAACAGCGGAAATGACG
AAATGTACATAGAAACTTCTGAAGTTGTGATAGCGTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27357.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis