Browse Element(s) Details


Os.6274.1.S1_at

Description gb:AK119689.1
DB_XREF= gi:37989312
TID=Os.6274.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6274 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-120-E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-157-B03, full insert sequence.
FL= gb:AK119689.1 gb:AK063729.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g477304/11nonspecific lipid-transfer protein AKCS9 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g47680NANA5+27237302..27239600hypothetical protein
LOC_Os05g47690NANA5+27240420..27241809Reticulon family protein, expressed
LOC_Os05g47700Os.6664.1.S1_at11/115+27247373..27248076nonspecific lipid-transfer protein AKCS9 precursor, putative, expressed
LOC_Os05g47710NANA5+27249002..27254125transposon protein, putative, Mutator sub-class
LOC_Os05g47720Os.35344.3.S1_x_at10/115+27256760..27259473hypothetical protein
LOC_Os05g47720Os.35344.18.S1_x_at9/115+27256760..27259473hypothetical protein
LOC_Os05g47720OsAffx.22940.2.S1_s_at6/115+27256760..27259473hypothetical protein
LOC_Os05g47720OsAffx.22940.3.S1_x_at5/115+27256760..27259473hypothetical protein
LOC_Os05g47720OsAffx.22940.5.S1_x_at4/115+27256760..27259473hypothetical protein
LOC_Os05g47720OsAffx.32051.1.S1_x_at1/115+27256760..27259473hypothetical protein
LOC_Os05g47720OsAffx.22940.1.S1_s_at1/115+27256760..27259473hypothetical protein
LOC_Os05g47730Os.6274.1.S1_at4/115+27262527..27262817nonspecific lipid-transfer protein AKCS9 precursor, putative, expressed
LOC_Os05g47740OsAffx.19542.3.S1_x_at7/115+27264843..27269065retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g47750OsAffx.27357.2.S1_at11/115+27270255..27272647expressed protein
LOC_Os05g47760NANA5+27273439..27274317expressed protein
LOC_Os05g47770OsAffx.27357.1.S1_at11/115+27277679..27284205Protein kinase domain containing protein, expressed
LOC_Os05g47770OsAffx.25952.1.S1_s_at1/115+27277679..27284205Protein kinase domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6274.1.S1_at--134--7411Chr05:27262492..27262516 (25 bp)
GTGATCACTGAGCTAGCTGAGACAA
NONE
Os.6274.1.S1_at--1116--5291Chr05:27262535..27262559 (25 bp)
GAAGGCATCTGCAGTGTTCGTCCTG
LOC_Os05g47730
Os.6274.1.S1_at--1103--9151Chr05:27262719..27262743 (25 bp)
TGCCAGTACAAGAAGGACCCGAACA
LOC_Os05g47730
Os.6274.1.S1_at--717--8991Chr05:27262744..27262768 (25 bp)
TGAAGAAGTACGTCAACTCGCCCAA
LOC_Os05g47730
Os.6274.1.S1_at--922--5311Chr05:27262775..27262799 (25 bp)
GAAGGTCTTCGCCACCTGCAAGGTT
LOC_Os05g47730
Os.6274.1.S1_at--853--3011Chr05:27262810..27262834 (25 bp)
AATGCTAAGCACCTCGTATGGTCAC
NONE
Os.6274.1.S1_at--642--6911Chr05:27262825..27262849 (25 bp)
GTATGGTCACACACGCACTGGTCAT
NONE
Os.6274.1.S1_at--734--331Chr05:27262852..27262876 (25 bp)
ATACAGTAGCACACCAATGGCATAT
NONE
Os.6274.1.S1_at--466--3571Chr05:27262872..27262896 (25 bp)
CATATGCATGGTTTTCAGGCTGCCA
NONE
Os.6274.1.S1_at--434--9631Chr05:27262886..27262910 (25 bp)
TCAGGCTGCCATTATGCCATATGGG
NONE
Os.6274.1.S1_at--26--351Chr05:27263054..27263503 (25 bp)
ATAAATGTGAGACGGCTTTTTGCTT
NONE
Target Sequence 
GTGATCACTGAGCTAGCTGAGACAAGTTTTTGAGTATGGCAGCGAAGGCATCTGCAGTGTTCGTCCTGCTGGTGGTGGTG
CTCGCGGTGGCCGCGGCGATGCGGGGAGCGGAGGCGGCGACGTGCACGCCGACGCAGCTGACGCCGTGCGCGCCGGCGAT
CGTGGGGAACTCGCCGCCGACGGCGGCGTGCTGCGGGAAGCTGAAGGCGCACCCGGCGAGCTGCTTCTGCCAGTACAAGA
AGGACCCGAACATGAAGAAGTACGTCAACTCGCCCAACGGCAAGAAGGTCTTCGCCACCTGCAAGGTTCCCCTGCCCAAA
TGCTAAGCACCTCGTATGGTCACACACGCACTGGTCATCAATACAGTAGCACACCAATGGCATATGCATGGTTTTCAGGC
TGCCATTATGCCATATGGGTGTCAGTTTAAGTATACTAATAAAATGAGTCACTAGACAGTGTTCTGTTTAAAGTTTCAGA
ATAAAATCCAGGCTCAGTACNTGCTNGGTGTGNTATGANCTTCTGCTCTGCAAGCTTTATGTGTCATGTATATGTTACAN
AAATAAATGTGAGACGGCTTTTTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6274.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis