Browse Element(s) Details


OsAffx.27357.2.S1_at

Description tigr:9633.m04448
TID=OsAffx.27357.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to receptor-like kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4775011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g47700Os.6664.1.S1_at11/115+27247373..27248076nonspecific lipid-transfer protein AKCS9 precursor, putative, expressed
LOC_Os05g47710NANA5+27249002..27254125transposon protein, putative, Mutator sub-class
LOC_Os05g47720Os.35344.3.S1_x_at10/115+27256760..27259473hypothetical protein
LOC_Os05g47720Os.35344.18.S1_x_at9/115+27256760..27259473hypothetical protein
LOC_Os05g47720OsAffx.22940.2.S1_s_at6/115+27256760..27259473hypothetical protein
LOC_Os05g47720OsAffx.22940.3.S1_x_at5/115+27256760..27259473hypothetical protein
LOC_Os05g47720OsAffx.22940.5.S1_x_at4/115+27256760..27259473hypothetical protein
LOC_Os05g47720OsAffx.32051.1.S1_x_at1/115+27256760..27259473hypothetical protein
LOC_Os05g47720OsAffx.22940.1.S1_s_at1/115+27256760..27259473hypothetical protein
LOC_Os05g47730Os.6274.1.S1_at4/115+27262527..27262817nonspecific lipid-transfer protein AKCS9 precursor, putative, expressed
LOC_Os05g47740OsAffx.19542.3.S1_x_at7/115+27264843..27269065retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g47750OsAffx.27357.2.S1_at11/115+27270255..27272647expressed protein
LOC_Os05g47760NANA5+27273439..27274317expressed protein
LOC_Os05g47770OsAffx.27357.1.S1_at11/115+27277679..27284205Protein kinase domain containing protein, expressed
LOC_Os05g47770OsAffx.25952.1.S1_s_at1/115+27277679..27284205Protein kinase domain containing protein, expressed
LOC_Os05g47780Os.19172.1.S1_at11/115+27294266..27298959CHY zinc finger family protein, expressed
LOC_Os05g47780OsAffx.27359.1.S1_x_at10/115+27294266..27298959CHY zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009621biological_processresponse to pathogenic fungi
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27357.2.S1_at--974--6911Chr05:27271868..27271890 (23 bp)
GTAGGCTATCGGATCATGTTCTTCA
LOC_Os05g47750
OsAffx.27357.2.S1_at--482--731Chr05:27271853..27271877 (25 bp)
ATGTTCTTCATCAGGTACCGTTTGT
LOC_Os05g47750
OsAffx.27357.2.S1_at--556--9631Chr05:27271843..27271867 (25 bp)
TCAGGTACCGTTTGTATCTTCTAAC
LOC_Os05g47750
OsAffx.27357.2.S1_at--270--1051Chr05:27270639..27270663 (25 bp)
AGGTGTATCAGTCGTTTCAGGTGTA
LOC_Os05g47750
OsAffx.27357.2.S1_at--636--3131Chr05:27270615..27270639 (25 bp)
AATTTTATTGTTCCTGCTTCTCATG
LOC_Os05g47750
OsAffx.27357.2.S1_at--1120--10571Chr05:27270598..27270622 (25 bp)
TTCTCATGTGCACCTTGTGTGTTAA
LOC_Os05g47750
OsAffx.27357.2.S1_at--193--5011Chr05:27270564..27270588 (25 bp)
GCATGGTCTATTGTCCTCGATGGGA
LOC_Os05g47750
OsAffx.27357.2.S1_at--809--2711Chr05:27270529..27270553 (25 bp)
AAGCACCAAACATCGAGTCCTTCTT
LOC_Os05g47750
OsAffx.27357.2.S1_at--1002--411Chr05:27270441..27270465 (25 bp)
ATCTTTTAGTCACAAGCTCGGCCAA
LOC_Os05g47750
OsAffx.27357.2.S1_at--58--5171Chr05:27270308..27270332 (25 bp)
GCAAGCATCAGCAGAACTTCTCATG
LOC_Os05g47750
OsAffx.27357.2.S1_at--791--9511Chr05:27270290..27270314 (25 bp)
TCTCATGTTAACGTTGTCACCTTGT
LOC_Os05g47750
Target Sequence 
GTAGGCTATCGGATCATGTTCTTCATCAGGTACCGTTTGTATCTTCTAACAAACTTGAGGGCAAGTCAAGGATCAAAGAT
ATCGAAGAAAAAGGCTATTGCAATAGGTGTATCAGTCGTTTCAGGTGTAATTTTATTGTTCCTGCTTCTCATGTGCACCT
TGTGTGTTAAGAAGTTCTGGCATGGTCTATTGTCCTCGATGGGAAAATCCAAAGAAGCACCAAACATCGAGTCCTTCTTG
CAAAAGCATGAAGCTCAACACCCAAAGAGATATTCTTACTCAGAAGTGAAAACAATGACCAAATCTTTTAGTCACAAGCT
CGGCCAAGGTGGCTTTGGTACTGTTTACATGGGCAAGATGCCAAATGGCAAGCCAATTGCAGTGAAGTTACTGAAGTCTT
GCAAGGATGATGGCCAAGAATTCATGAATGAGGTAGCAAGCATCAGCAGAACTTCTCATGTTAACGTTGTCACCTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27357.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis