Browse Element(s) Details


Os.16042.1.S1_at

Description gb:AK108248.1
DB_XREF= gi:32993457
TID=Os.16042.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16042 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-138-F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-140-H09, full insert sequence.
FL= gb:AK109642.1 gb:AK108248.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4782011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g47799NANA5+27305791..27307255NA
LOC_Os05g47810OsAffx.15139.1.S1_x_at10/115+27320305..27321335hypothetical protein
LOC_Os05g47820Os.16042.1.S1_at11/115+27329015..27331097expressed protein
LOC_Os05g47820Os.16042.1.S2_at11/115+27329015..27331097expressed protein
LOC_Os05g47830OsAffx.27360.1.S1_s_at11/115+27334665..27335802expressed protein
LOC_Os05g47830OsAffx.30025.1.S1_x_at1/115+27334665..27335802expressed protein
LOC_Os05g47840Os.53178.1.S1_s_at11/115+27339718..27341524IPP transferase family protein, expressed
LOC_Os05g47840Os.53178.1.S1_at11/115+27339718..27341524IPP transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16042.1.S1_at--708--2691Chr05:27330592..27330616 (25 bp)
AAGCTCCGCGGAAGCAGTGGAACCT
LOC_Os05g47820
Os.16042.1.S1_at--259--2691Chr05:27330515..27330539 (25 bp)
AAGCTCTGGAACATGGAAGCCGCCG
LOC_Os05g47820
Os.16042.1.S1_at--394--8411Chr05:27330367..27330391 (25 bp)
GGCCCAGGAGCGTCCAGCGACAAGT
LOC_Os05g47820
Os.16042.1.S1_at--570--2851Chr05:27330229..27330370 (25 bp)
AAGTCGACTCGATTTGCCCTGGGAA
LOC_Os05g47820
Os.16042.1.S1_at--392--7931Chr05:27330060..27330084 (25 bp)
GGATTCTGAGTTGCTCCAAGAAGGA
LOC_Os05g47820
Os.16042.1.S1_at--444--371Chr05:27330010..27330034 (25 bp)
ATCAACCATTGGCTTATCGTAGTTA
LOC_Os05g47820
Os.16042.1.S1_at--207--1131Chr05:27329945..27329969 (25 bp)
AGTGCATCCATGCTTATGCTGTTGA
LOC_Os05g47820
Os.16042.1.S1_at--804--8671Chr05:27329910..27329934 (25 bp)
TGTGTAGTTTTTTACCTGACTGTTG
LOC_Os05g47820
Os.16042.1.S1_at--271--7691Chr05:27329885..27329909 (25 bp)
GGGTTTTGCTTCTCGCTTTCGTGAA
LOC_Os05g47820
Os.16042.1.S1_at--431--10311Chr05:27329869..27329893 (25 bp)
TTTCGTGAAGCCTCTGCAAACTCTT
LOC_Os05g47820
Os.16042.1.S1_at--789--9551Chr05:27329845..27329869 (25 bp)
TCTTTCTTTTATGCCTAGTTCGGAA
LOC_Os05g47820
Target Sequence 
AAGCTCCGCGGAAGCAGTGGAACCTGCGGTATCGGAAGGGCGGGCGGGACGGCGGCGAGGACGCGCTGCAGAACAAGAAG
CTCTGGAACATGGAAGCCGCCGGCGGCGGCGGCGGCGGCGGCGCCAGGGCGANCCGCGGGTTCTCGGTGGAGCTGACGCG
CCNAGGAGATCGACGCCGACTTCTTCGCGATCACCGGCCGGAAGGCGCCGCGCAAGCCGGCGAAGCGGCCCAGGAGCGTC
CAGCGACAAGTCGACTCGATTTGCCCTGGGAACTCGCTCTGGGAGGTGAGCCGCGATCGCTACAAGGTGAACGAGAAGGG
GGGATTCTGAGTTGCTCCAAGAAGGAGGAGATGGATTTTCCGAGAAGCAAGATCAACCATTGGCTTATCGTAGTTATAGA
CAGAGAGAGATTCAGACTGTCAGTCAGAATTGTTTCAGTGCATCCATGCTTATGCTGTTGATGATGAANCTTGTGTAGTT
TTTTACCTGACTGTTGGGGTTTTGCTTCTCGCTTTCGTGAAGCCTCTGCAAACTCTTCTTTCTTTTATGCCTAGTTCGGA
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16042.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis