Browse Element(s) Details


Os.12141.1.S1_at

Description gb:AK073355.1
DB_XREF= gi:32983378
TID=Os.12141.1
CNT=25
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12141 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-202-E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033030A08, full insert sequence.
FL= gb:AK061303.1 gb:AK073355.1 gb:AK104400.1 gb:AK104138.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3227011/11hydrolase, alpha/beta fold family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g32210NANA3+18381215..18383064hypothetical protein
LOC_Os03g32220Os.55921.1.S1_at11/113+18385327..18386131Zinc finger, C2H2 type family protein, expressed
LOC_Os03g32230Os.50970.1.S1_at11/113+18390892..18391988Zinc finger, C2H2 type family protein, expressed
LOC_Os03g32240OsAffx.25336.1.S1_at11/113+18395746..18397416hypothetical protein
LOC_Os03g32250OsAffx.3387.1.S1_at11/113+18399271..18400005expressed protein
LOC_Os03g32260OsAffx.13154.1.S1_x_at11/113+18401290..18401888hypothetical protein
LOC_Os03g32260OsAffx.13154.1.S1_at10/113+18401290..18401888hypothetical protein
LOC_Os03g32260OsAffx.21755.1.S1_x_at1/113+18401290..18401888hypothetical protein
LOC_Os03g32270Os.53091.1.S1_at11/113+18405946..18411214hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g32270Os.12141.1.S1_at11/113+18405946..18411214hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g32290OsAffx.13156.1.S1_at11/113+18432209..18434255hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12141.1.S1_at--970--311Chr03:18406497..18406521 (25 bp)
ATACGTCCAGACATAGCCCTGAGTG
LOC_Os03g32270
Os.12141.1.S1_at--1115--9331Chr03:18406472..18406496 (25 bp)
TCGCCCAGACAATCTTCCAGAGTGA
LOC_Os03g32270
Os.12141.1.S1_at--461--1331Chr03:18406454..18406478 (25 bp)
AGAGTGATGTGCGAAGCCTCCTACC
LOC_Os03g32270
Os.12141.1.S1_at--301--4031Chr03:18406420..18406444 (25 bp)
CGTACCATGCCACATTGTTCAGAGC
LOC_Os03g32270
Os.12141.1.S1_at--778--7911Chr03:18406375..18406399 (25 bp)
GGTTGTGGTGTCTGAGTACCTGCAC
LOC_Os03g32270
Os.12141.1.S1_at--937--991Chr03:18406322..18406346 (25 bp)
AGGTAATGCCGTCTGAGGGCCATCT
LOC_Os03g32270
Os.12141.1.S1_at--222--3271Chr03:18406293..18406317 (25 bp)
CAACTTAGCTCACCGGACATAGTCA
LOC_Os03g32270
Os.12141.1.S1_at--343--10631Chr03:18406256..18406280 (25 bp)
TTCGACACATCCAGCATGACATTGC
LOC_Os03g32270
Os.12141.1.S1_at--877--91Chr03:18406213..18406237 (25 bp)
ATTCCGCCTAGAGCTGTTCATCAGA
LOC_Os03g32270
Os.12141.1.S1_at--628--10091Chr03:18406144..18406168 (25 bp)
TAGGATCCATCTACTGTTGTTGTAA
LOC_Os03g32270
Os.12141.1.S1_at--234--9791Chr03:18406019..18406043 (25 bp)
TAACGTAACCGAGTCCTTCAGAATT
LOC_Os03g32270
Target Sequence 
ATACGTCCAGACATAGCCCTGAGTGTCGCCCAGACAATCTTCCAGAGTGATGTGCGAAGCCTCCTACCACTTGTCACCGT
ACCATGCCACATTGTTCAGAGCACCAAAGATCTTGCTGTGCCGGTTGTGGTGTCTGAGTACCTGCACAAGCACCTCGGTG
GCGACTCAATCGTCGAGGTAATGCCGTCTGAGGGCCATCTACCCCAACTTAGCTCACCGGACATAGTCATCCCTGTCTTG
CTTCGACACATCCAGCATGACATTGCGGTCTAGGTGGTGCAACCATTCCGCCTAGAGCTGTTCATCAGAAGTTGTATAAT
TTCAGTATCTGTACTCCACTGAATCACCCGACTTAGGATCCATCTACTGTTGTTGTAATAAGATTCTCCATATGTTGTAA
ATTGATGGCGGTGGAGAAGTAGTCTATGGTGTTTGTAAACCACTGCACGTATGATGTTCATTATAATGTTGGATGTTTTA
ACGTAACCGAGTCCTTCAGAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12141.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis