Browse Element(s) Details


Os.12144.2.S1_x_at

Description gb:CB665952
DB_XREF= gi:29669677
DB_XREF=OSJNEd12K06.r
CLONE=OSJNEd12K06
TID=Os.12144.2
CNT=21
FEA=mRNA
TIER=Stack
STK=12
UG=Os.12144 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ADP-ribosylation factor (P0425G02.30), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5979011/11ADP-ribosylation factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g59740Os.7103.1.S1_at11/111+34885058..34886784expressed protein
LOC_Os01g59750OsAffx.23859.1.S1_at10/111+34887517..3489115214 kDa zinc-binding protein, putative, expressed
LOC_Os01g59760Os.42200.1.S1_at10/111+34892143..34895139bZIP transcription factor family protein, expressed
LOC_Os01g59770NANA1+34896958..34897269hypothetical protein
LOC_Os01g59780OsAffx.21654.1.S1_at11/111+34901681..34904452AP2 domain containing protein, expressed
LOC_Os01g59780OsAffx.21654.1.S1_x_at11/111+34901681..34904452AP2 domain containing protein, expressed
LOC_Os01g59790Os.12144.1.S1_a_at11/111+34907190..34910479ADP-ribosylation factor, putative, expressed
LOC_Os01g59790Os.12144.2.S1_x_at11/111+34907190..34910479ADP-ribosylation factor, putative, expressed
LOC_Os01g59800Os.21368.1.A1_at11/111+34910742..34913959Vacuolar protein sorting 36 containing protein, expressed
LOC_Os01g59819Os.55138.1.S1_x_at1/111+34915857..34929208Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g59819OsAffx.20707.2.S1_x_at1/111+34915857..34929208Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g59819Os.55476.1.S1_at1/111+34915857..34929208Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g59819Os.51558.1.S1_x_at1/111+34915857..34929208Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g59840Os.51558.1.S1_x_at11/111+34934259..34937859Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os01g59840Os.51558.1.S1_at11/111+34934259..34937859Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os01g59840OsAffx.1874.1.S1_at1/111+34934259..34937859Cyanogenic beta-glucosidase precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0005798cellular_componentGolgi-associated vesicle
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12144.2.S1_x_at--315--3471Chr01:34908872..34908896 (25 bp)
CAGGGACTCATCTTTGTTGTGGACA
LOC_Os01g59790
Os.12144.2.S1_x_at--147--891Chr01:34908921..34908945 (25 bp)
AGGCCAGAGACGAGCTTCACAGGAT
LOC_Os01g59790
Os.12144.2.S1_x_at--544--3831Chr01:34909377..34909401 (25 bp)
CTGACAAGCTTGGTTTGCATTCCCT
LOC_Os01g59790
Os.12144.2.S1_x_at--44--6211Chr01:34909408..34909849 (25 bp)
GAGGCACTGGTACATTCAGAGCACT
LOC_Os01g59790
Os.12144.2.S1_x_at--864--1491Chr01:34909844..34909868 (25 bp)
AGCACTTGTGCTACATCTGGTGAAG
LOC_Os01g59790
Os.12144.2.S1_x_at--1072--691Chr01:34909875..34909899 (25 bp)
ATGAGGGTCTTGACTGGCTTTCCAA
LOC_Os01g59790
Os.12144.2.S1_x_at--270--3211Chr01:34910125..34910147 (23 bp)
CAAGGCTTGAGCGTTTTGGCAGCTG
LOC_Os01g59790
Os.12144.2.S1_x_at--901--9611Chr01:34910162..34910186 (25 bp)
TCACTAGTGCCGGTTTACATATTAT
LOC_Os01g59790
Os.12144.2.S1_x_at--460--8271Chr01:34910250..34910274 (25 bp)
GGCTAGTACCAGATTGTTCCTTTTC
LOC_Os01g59790
Os.12144.2.S1_x_at--883--10331Chr01:34910317..34910341 (25 bp)
TTTACTGTGCTGTCCATATGTACCC
LOC_Os01g59790
Os.12144.2.S1_x_at--301--271Chr01:34910332..34910356 (25 bp)
ATATGTACCCGTTTGTTCTGAGATG
LOC_Os01g59790
Target Sequence 
CAGGGACTCATCTTTGTTGTGGACAGCAATGATAGGGAGCGTGTTGTTGAGGCCAGAGACGAGCTTCACAGGATGCTGAA
CGAGGATGAGCTGCGTGATGCTGTGCTGCTTGTATTTGCAAACAAACAAGATCTTCCTAATGCCATGAATGCAGCTGAAA
TCACTGACAAGCTTGGTTTGCATTCCCTGCGCCAGAGGCACTGGTACATTCAGAGCACTTGTGCTACATCTGGTGAAGGG
TTGTATGAGGGTCTTGACTGGCTTTCCAACAACATTGCCAGCAAGGCTTGAGCGTTTTGGCAGCTGGATATCTGAACAAT
TCACTAGTGCCGGTTTACATATTATATAACATATANNCACCCTACCACACNTAGTGTGGGTGCCTGTGAAGGAAAAAACT
CCTTTGTGGAGGCTAGTACCAGATTGTTCCTTTTCGTGGGCACTATAAGTGCTTATATTTTGTTTGGTTTTACAACATTT
ACTGTGCTGTCCATATGTACCCGTTTGTTCTGAGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12144.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis