Browse Element(s) Details


Os.12150.1.S1_s_at

Description gb:CB625851
DB_XREF= gi:29620840
DB_XREF=OSIIEa15I21.r
CLONE=OSIIEa15I21
TID=Os.12150.1
CNT=43
FEA=EST
TIER=Stack
STK=9
UG=Os.12150 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_566554.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3308010/11protein phosphatase 2C, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33040Os.7294.1.S1_at11/114+19818732..19822160Alpha amylase, catalytic domain containing protein, expressed
LOC_Os04g33050Os.50201.1.S1_at11/114+19822517..19828129forkhead-associated domain-containing protein, putative, expressed
LOC_Os04g33050Os.9965.1.S1_at1/114+19822517..19828129forkhead-associated domain-containing protein, putative, expressed
LOC_Os04g33060Os.21228.1.S1_at11/114+19828386..19832229NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g33070Os.38834.1.S1_at1/114+19832690..19832959hypothetical protein
LOC_Os04g33080Os.12150.1.S1_s_at10/114+19834170..19836128protein phosphatase 2C, putative, expressed
LOC_Os04g33090NANA4+19847040..19849171hypothetical protein
LOC_Os04g33100OsAffx.14104.1.S1_at11/114+19851363..19851786hypothetical protein
LOC_Os04g33110Os.26063.1.S1_at2/114+19858879..19861827hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009934biological_processregulation of meristem organization
GO:0005634cellular_componentnucleus
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12150.1.S1_s_at--549--7031Chr04:19834773..19834797 (25 bp)
GTACACAAATCCTCACACAGTTAGT
LOC_Os04g33080
Os.12150.1.S1_s_at--839--3291Chr04:19834758..19834782 (25 bp)
CACAGTTAGTCATAAAGTCACAGAG
LOC_Os04g33080
Os.12150.1.S1_s_at--582--7851Chr04:19834712..19834736 (25 bp)
GGTAGTGATGGCTTATTTGATTTCT
LOC_Os04g33080
Os.12150.1.S1_s_at--675--211Chr04:19834698..19834722 (25 bp)
ATTTGATTTCTTCAGCAATGACGAA
LOC_Os04g33080
Os.12150.1.S1_s_at--993--1831Chr04:19834678..19834702 (25 bp)
ACGAAGTTGTTCAGTTGGTTTATCA
LOC_Os04g33080
Os.12150.1.S1_s_at--95--6471Chr04:19834643..19834667 (25 bp)
GATAATCCAATTGGTGATCCTGCAA
LOC_Os04g33080
Os.12150.1.S1_s_at--820--6371Chr04:19834628..19834652 (25 bp)
GATCCTGCAAAGTATCTCATTGAGC
LOC_Os04g33080
Os.12150.1.S1_s_at--898--6891Chr04:19834617..19834641 (25 bp)
GTATCTCATTGAGCAACTTTTACTT
LOC_Os04g33080
Os.12150.1.S1_s_at--644--5951Chr04:19834607..19834631 (25 bp)
GAGCAACTTTTACTTAAAGCAGCGA
LOC_Os04g33080
Os.12150.1.S1_s_at--695--5291Chr04:19834284..19834608 (25 bp)
GAAGGAAGCAGCTTTAACAGCTGAA
LOC_Os04g33080
Os.12150.1.S1_s_at--940--3391Chr04:19834140..19834164 (25 bp)
CAGAATTCATGCAACAAGCTTATCA
NONE
Target Sequence 
GTACACAAATCCTCACACAGTTAGTCATAAAGTCACAGAGGATGATTTGTTTGTTGTGCTTGGTAGTGATGGCTTATTTG
ATTTCTTCAGCAATGACGAAGTTGTTCAGTTGGTTTATCAATTTATGCATGATAATCCAATTGGTGATCCTGCAAAGTAT
CTCATTGAGCAACTTTTACTTAAAGCAGCGAAGGAAGCAGCTTTAACAGCTGAAGAATTGATGAGGATACCTGTTGGGAG
CAGGAGAAAGTACCACGATGATGTTACCNTCATTGTTATCATCCTTGGAAATGCTCAAAGGACAATGACAGCGTCAACTT
CACTCTGAAGATGCAGAATTCATGCAACAAGCTTATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12150.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis