Browse Element(s) Details


Os.12153.1.S1_at

Description gb:AK061514.1
DB_XREF= gi:32971532
TID=Os.12153.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12153 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-025-A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-309-H03, full insert sequence.
FL= gb:AK104061.1 gb:AK061514.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4898011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48920OsAffx.3003.1.S1_at11/112+29915784..29917308Ubiquitin-conjugating enzyme family protein
LOC_Os02g48930NANA2+29918103..29921055transposon protein, putative, Mutator sub-class
LOC_Os02g48940Os.49661.1.S1_at3/112+29921620..29924744expressed protein
LOC_Os02g48950OsAffx.12556.1.S1_at11/112+29925758..29928010Ubiquitin-conjugating enzyme family protein
LOC_Os02g48964Os.14995.1.S1_a_at11/112+29928601..29935779WD-40 repeat family protein, putative, expressed
LOC_Os02g48964OsAffx.30727.1.S1_at1/112+29928601..29935779WD-40 repeat family protein, putative, expressed
LOC_Os02g48980Os.12153.1.S1_at11/112+29941372..29943689expressed protein
LOC_Os02g48980OsAffx.24792.1.S1_at11/112+29941372..29943689expressed protein
LOC_Os02g48990Os.27551.1.S1_at11/112+29944849..29950956CRAL/TRIO, N-terminus family protein, expressed
LOC_Os02g49000Os.45161.1.A1_x_at2/112+29958098..29966763retrotransposon protein, putative, unclassified
LOC_Os02g49000OsAffx.17536.1.S1_at1/112+29958098..29966763retrotransposon protein, putative, unclassified
LOC_Os02g49000OsAffx.16451.1.A1_x_at1/112+29958098..29966763retrotransposon protein, putative, unclassified
LOC_Os02g49000OsAffx.8201.1.S1_x_at1/112+29958098..29966763retrotransposon protein, putative, unclassified
LOC_Os02g49000OsAffx.22699.1.S1_x_at1/112+29958098..29966763retrotransposon protein, putative, unclassified
LOC_Os02g49010NANA2+29967219..29968833hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12153.1.S1_at--921--6691Chr02:29941591..29941615 (25 bp)
GTTCCATTGAGTTATTATGTCTTCC
LOC_Os02g48980
Os.12153.1.S1_at--620--8711Chr02:29941574..29941598 (25 bp)
TGTCTTCCATTTATCCAAAGTTGGT
LOC_Os02g48980
Os.12153.1.S1_at--741--9131Chr02:29941561..29941585 (25 bp)
TCCAAAGTTGGTGTGCTGTTGTAAC
LOC_Os02g48980
Os.12153.1.S1_at--202--7471Chr02:29941551..29941575 (25 bp)
GTGTGCTGTTGTAACCAATGAGGAT
LOC_Os02g48980
Os.12153.1.S1_at--863--8631Chr02:29941508..29941532 (25 bp)
TGGGCATTTTCCTTTTGCGTGTAAA
LOC_Os02g48980
Os.12153.1.S1_at--341--10291Chr02:29941495..29941519 (25 bp)
TTTGCGTGTAAAATCCTTTGTAATT
LOC_Os02g48980
Os.12153.1.S1_at--329--10431Chr02:29941471..29941495 (25 bp)
TTATGGCAGAGGCTACGTATTATCT
LOC_Os02g48980
Os.12153.1.S1_at--1078--151Chr02:29941453..29941477 (25 bp)
ATTATCTGGAATCTCACTTCTCGGT
LOC_Os02g48980
Os.12153.1.S1_at--185--3751Chr02:29941441..29941465 (25 bp)
CTCACTTCTCGGTTGACTACTTAGA
LOC_Os02g48980
Os.12153.1.S1_at--81--5711Chr02:29941427..29941451 (25 bp)
GACTACTTAGAACTCACCTTCTGTC
LOC_Os02g48980
Os.12153.1.S1_at--607--2531Chr02:29941417..29941441 (25 bp)
AACTCACCTTCTGTCGCTGCATTGT
LOC_Os02g48980
Target Sequence 
GTTCCATTGAGTTATTATGTCTTCCATTTATCCAAAGTTGGTGTGCTGTTGTAACCAATGAGGATTGAGTTAGTTCACNN
NNCCNNNNNNNNNNGGCTGGGCATTTTCCTTTTGCGTGTAAAATCCTTTGTAATTTATGGCAGAGGCTACGTATTATCTG
GAATCTCACTTCTCGGTTGACTACTTAGAACTCACCTTCTGTCGCTGCATTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12153.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis