Browse Element(s) Details


Os.12186.1.S1_at

Description gb:AK069815.1
DB_XREF= gi:32979839
TID=Os.12186.1
CNT=58
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12186 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Putative r40c1 protein - rice (OSJNBb0014I10.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023031K10, full insert sequence.
FL= gb:AK069815.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2104010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21030Os.7235.1.S1_at11/113+11916271..11918306GRAB2 protein, putative, expressed
LOC_Os03g21030Os.51926.1.S1_x_at1/113+11916271..11918306GRAB2 protein, putative, expressed
LOC_Os03g21040Os.12186.2.S1_x_at11/113+11936096..11938398expressed protein
LOC_Os03g21040Os.12186.2.S1_at11/113+11936096..11938398expressed protein
LOC_Os03g21040Os.12186.1.S1_at10/113+11936096..11938398expressed protein
LOC_Os03g21050Os.50244.1.S1_x_at10/113+11941346..11947616retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g21050OsAffx.21754.1.S1_x_at2/113+11941346..11947616retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g21060Os.17286.1.S1_at11/113+11952807..11955207NAC domain transcription factor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12186.1.S1_at--275--4551Chr03:11936712..11936736 (25 bp)
GCCCTCTGCCTTTGTTGCTAGAATA
LOC_Os03g21040
Os.12186.1.S1_at--244--9471Chr03:11936650..11936674 (25 bp)
TCTGTGTCCGTGTGTAATGCTTTTA
LOC_Os03g21040
Os.12186.1.S1_at--26--10591Chr03:11936619..11936643 (25 bp)
TTCTCGAGTCCTGCTTTTGTGACAA
LOC_Os03g21040
Os.12186.1.S1_at--614--1331Chr03:11936579..11936603 (25 bp)
AGAGGTGTCGTTTCCGTGAACTATC
LOC_Os03g21040
Os.12186.1.S1_at--1091--5391Chr03:11936562..11936586 (25 bp)
GAACTATCTCGAAGGCGTTTGGCCT
LOC_Os03g21040
Os.12186.1.S1_at--176--5071Chr03:11936536..11936560 (25 bp)
GCAGCTTGTTCTTCAGATGTTCGGA
LOC_Os03g21040
Os.12186.1.S1_at--85--6271Chr03:11936521..11936545 (25 bp)
GATGTTCGGAGTTTCAGACCTTTTG
LOC_Os03g21040
Os.12186.1.S1_at--48--9671Chr03:11936472..11936496 (25 bp)
TCAGCCATGTGTCTAGTTCGATCAA
LOC_Os03g21040
Os.12186.1.S1_at--796--6375Chr10:1781681..1781711 (25 bp)
GATCCTGTGCAGTTGTTATTGTAAC
NONE
Os.12186.1.S1_at--165--5331NONE
GAAGTCATCTAGAGCCACTGGATCT
NONE
Os.12186.1.S1_at--563--2911Chr03:11936169..11936192 (24 bp)
AAGGATTTGATTGCTGTCTGATGCC
LOC_Os03g21040
Target Sequence 
GCCCTCTGCCTTTGTTGCTAGAATAAAAGTCGTGTGCGATGATCAGTGGTGATGGTNTTGTGTCTGTGTCCGTGTGTAAT
GCTTTTAGTCGTTTTCTCGAGTCCTGCTTTTGTGACAAAATGGGGGTGAGAGGAGAGGTGTCGTTTCCGTGAACTATCTC
GAAGGCGTTTGGCCTTGCAGCTTGTTCTTCAGATGTTCGGAGTTTCAGACCTTTTGATGAGTACCCTGCTTTATCATTTA
TCAGCCATGTGTCTAGTTCGATCAATATGCATCCTTTGAAGTGGCATTGGTTTGTCTTTGAGGATCAAGATCCTGTGCAG
TTGTTATTGTAACTGTAACTTAAGCAGTTACATGTGCATCACATGATCTAGAATGGAAGGCCAGGATGTGAAGTGGTACT
GTAGCAGAGATGTACTATTATACCTGTACTGTAGAAGTCATCTAGAGCCACTGGATCTGAAAACGGATGGCCATGATTGA
GTGCAGTTGCTATTGTGCAGTTACAATAGCAACTGCATTTGATCTCAATCCGTCTTGGAGGATTAAGGATTTGATTGCTG
TCTGATGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12186.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis