Browse Element(s) Details


Os.12205.1.S1_at

Description gb:AK103979.1
DB_XREF= gi:32989188
TID=Os.12205.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12205 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative FtsH protease (B1151A10.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-017-B05, full insert sequence.
FL= gb:AK103979.1 gb:AK072509.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3925011/11ATP-dependent metalloprotease FtsH family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g39190OsAffx.8958.1.S1_at11/111+22372952..22378585retrotransposon, putative, centromere-specific
LOC_Os01g39190OsAffx.8473.1.S1_x_at3/111+22372952..22378585retrotransposon, putative, centromere-specific
LOC_Os01g39190Os.47999.2.A1_x_at1/111+22372952..22378585retrotransposon, putative, centromere-specific
LOC_Os01g39190OsAffx.23574.1.S1_x_at1/111+22372952..22378585retrotransposon, putative, centromere-specific
LOC_Os01g39190OsAffx.25367.1.S1_at1/111+22372952..22378585retrotransposon, putative, centromere-specific
LOC_Os01g39190Os.47999.3.A1_x_at1/111+22372952..22378585retrotransposon, putative, centromere-specific
LOC_Os01g39190OsAffx.675.1.S1_x_at1/111+22372952..22378585retrotransposon, putative, centromere-specific
LOC_Os01g39200NANA1+22380476..22385348retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g39210NANA1+22387929..22388258hypothetical protein
LOC_Os01g39220OsAffx.23571.1.S1_at11/111+22391168..22391587LOB domain protein 22, putative
LOC_Os01g39220OsAffx.23571.1.S1_x_at11/111+22391168..22391587LOB domain protein 22, putative
LOC_Os01g39230NANA1+22394645..22395088hypothetical protein
LOC_Os01g39250Os.12205.1.S1_at11/111+22401234..22406708ATP-dependent metalloprotease FtsH family protein, expressed
LOC_Os01g39260Os.19618.1.S1_at11/111+22409139..22415086ATP-dependent metalloprotease FtsH family protein, expressed
LOC_Os01g39270Os.16736.1.S1_at11/111+22415051..22417932NAD binding domain of 6-phosphogluconate dehydrogenase family protein, expressed
LOC_Os01g39270Os.16736.1.S1_s_at11/111+22415051..22417932NAD binding domain of 6-phosphogluconate dehydrogenase family protein, expressed
LOC_Os01g39270Os.40799.1.S1_at10/111+22415051..22417932NAD binding domain of 6-phosphogluconate dehydrogenase family protein, expressed
LOC_Os01g39280Os.36435.2.S1_x_at11/111+22418395..22418736pyridoxin biosynthesis protein ER1, putative
LOC_Os01g39280OsAffx.20707.1.S1_x_at1/111+22418395..22418736pyridoxin biosynthesis protein ER1, putative
LOC_Os01g39280OsAffx.20707.2.S1_x_at1/111+22418395..22418736pyridoxin biosynthesis protein ER1, putative
LOC_Os01g39290Os.52512.1.S1_at3/111+22425382..22426396Harpin-induced protein 1 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006510biological_processATP-dependent proteolysis
GO:0010206biological_processphotosystem II repair
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0004176molecular_functionATP-dependent peptidase activity
GO:0008233molecular_functionpeptidase activity
GO:0008237molecular_functionmetallopeptidase activity
GO:0008270molecular_functionzinc ion binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12205.1.S1_at--240--2351Chr01:22406117..22406141 (25 bp)
AAAGAAGATCTTGGCCCAGGCAAAT
LOC_Os01g39250
Os.12205.1.S1_at--226--9131Chr01:22406165..22406189 (25 bp)
TGCTGTTGAAGCTCCACGGAAGACG
LOC_Os01g39250
Os.12205.1.S1_at--1001--7851Chr01:22406292..22406316 (25 bp)
GGTATTGGATCTTGAGCGCATGGAA
LOC_Os01g39250
Os.12205.1.S1_at--768--3491Chr01:22406310..22406334 (25 bp)
CATGGAACATCCACCGATTGGCAGC
LOC_Os01g39250
Os.12205.1.S1_at--872--2291Chr01:22406380..22406404 (25 bp)
AAATGTGTAGTGTTCACCTGCTCTT
LOC_Os01g39250
Os.12205.1.S1_at--231--1771Chr01:22406395..22406419 (25 bp)
ACCTGCTCTTCTGCGCAAGAAATGT
LOC_Os01g39250
Os.12205.1.S1_at--1021--5571Chr01:22406413..22406437 (25 bp)
GAAATGTCTTTTGGTACGTTCTCAC
LOC_Os01g39250
Os.12205.1.S1_at--547--6731Chr01:22406430..22406454 (25 bp)
GTTCTCACCAGGTCAGAGCTGTTTT
LOC_Os01g39250
Os.12205.1.S1_at--1099--6471Chr01:22406527..22406551 (25 bp)
GATAGCTAACCGTAGTCCATGTCCT
LOC_Os01g39250
Os.12205.1.S1_at--538--7271Chr01:22406541..22406565 (25 bp)
GTCCATGTCCTTTGTTTATTTATCT
LOC_Os01g39250
Os.12205.1.S1_at--1089--8511Chr01:22406652..22406676 (25 bp)
TGGACTAGTCTAGGGTCGCACGTAT
LOC_Os01g39250
Target Sequence 
AAAGAAGATCTTGGCCCAGGCAAATAGCACACAGCAGCAGCAGGAGCATGCTGTTGAAGCTCCACGGAAGACGCCAGCTG
CGCCGTCGTCTCCAGCTGCGTCGGCGGCCGCAGCGGCGGCGGCGACGGCGGCCGCCGCAGCAAAACAAGCTGCGGCGAAA
GCCAAGGGTGTTGCTGGTATTGGATCTTGAGCGCATGGAACATCCACCGATTGGCAGCATAGGAGTACAATCTAAGTAGC
AGCTAAGGTAGGAGATTTGAGCAAAATGTGTAGTGTTCACCTGCTCTTCTGCGCAAGAAATGTCTTTTGGTACGTTCTCA
CCAGGTCAGAGCTGTTTTGTTGCTGGAGACCTTCCCTTCCAGGCTCCAGCGAGGGGCCTATGTAGTGTTGATATATTGTA
GTAATAATTTGATAGCTAACCGTAGTCCATGTCCTTTGTTTATTTATCTTTATTTAAGAAACTGACGACTATTAAAAATA
GAGGGGACATAGGACCAATATTCAGGAAATATTATTAAGGTTCAGGCAATTATATTGGACTAGTCTAGGGTCGCACGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12205.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis