Browse Element(s) Details


Os.12208.1.S1_at

Description gb:AK063855.1
DB_XREF= gi:32973873
TID=Os.12208.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12208 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0519E12.7 (P0519E12.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-122-D04, full insert sequence.
FL= gb:AK063855.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4377011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43710Os.8080.2.S1_x_at11/117+26156655..26161837glycosyltransferase 5, putative, expressed
LOC_Os07g43710Os.8080.1.S1_at11/117+26156655..26161837glycosyltransferase 5, putative, expressed
LOC_Os07g43720Os.52378.1.S1_at11/117+26162000..26166374expressed protein
LOC_Os07g43730OsAffx.16702.1.S1_at11/117+26168256..26170858expressed protein
LOC_Os07g43730Os.10158.1.S1_at10/117+26168256..26170858expressed protein
LOC_Os07g43740Os.41109.1.S1_x_at11/117+26171900..26172686Zinc finger, C3HC4 type family protein, expressed
LOC_Os07g43740Os.41109.1.S1_at11/117+26171900..26172686Zinc finger, C3HC4 type family protein, expressed
LOC_Os07g43750NANA7+26174883..26180507retrotransposon protein, putative, unclassified
LOC_Os07g43760Os.28943.1.S1_x_at2/117+26181136..26184015retrotransposon protein, putative, unclassified
LOC_Os07g43770Os.12208.1.S1_at11/117+26186433..26188309expressed protein
LOC_Os07g43770OsAffx.5627.1.S1_at11/117+26186433..26188309expressed protein
LOC_Os07g43780OsAffx.22848.4.S1_at3/117+26196214..26197718retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g43780OsAffx.22848.4.S1_x_at2/117+26196214..26197718retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g43790NANA7+26198027..26202728retrotransposon protein, putative, unclassified
LOC_Os07g43800Os.37996.1.S1_at11/117+26206842..26207760EF hand family protein, expressed
LOC_Os07g43810Os.14271.1.S1_at11/117+26210054..2621214729 kDa ribonucleoprotein A, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12208.1.S1_at--94--8951Chr07:26186837..26186861 (25 bp)
TGACGTGAGCACAAGCGATGCAATC
LOC_Os07g43770
Os.12208.1.S1_at--602--8471Chr07:26186793..26186817 (25 bp)
TGGCGCTGCAGACGACTGATTACCC
LOC_Os07g43770
Os.12208.1.S1_at--509--3211Chr07:26186738..26186762 (25 bp)
CAAGGCACCCGGCACATGATGACGC
LOC_Os07g43770
Os.12208.1.S1_at--100--711Chr07:26186723..26186747 (25 bp)
ATGATGACGCCGCAAAAGCCAAGAA
LOC_Os07g43770
Os.12208.1.S1_at--334--3731Chr07:26186686..26186710 (25 bp)
CTAAGCTGAATCAGGACGCCACCAT
LOC_Os07g43770
Os.12208.1.S1_at--304--8111Chr07:26186673..26186697 (25 bp)
GGACGCCACCATGTACAGATTAATA
LOC_Os07g43770
Os.12208.1.S1_at--269--3431Chr07:26186658..26186682 (25 bp)
CAGATTAATACGCAATTTTCCCTTT
LOC_Os07g43770
Os.12208.1.S1_at--551--10351Chr07:26186635..26186659 (25 bp)
TTTATTTTACATTACGCATCGATCG
LOC_Os07g43770
Os.12208.1.S1_at--1138--6371Chr07:26186615..26186639 (25 bp)
GATCGATTAACGGACAGCTAGTAGT
LOC_Os07g43770
Os.12208.1.S1_at--24--6891Chr07:26186546..26186570 (25 bp)
GTATTTTCATAATTGTTGTTGCCCA
LOC_Os07g43770
Os.12208.1.S1_at--592--4031Chr07:26186507..26186531 (25 bp)
CGTTTTGCTGCGTTTGAAGATTGGT
LOC_Os07g43770
Target Sequence 
TGACGTGAGCACAAGCGATGCAATCGTGGAGNNNATGTTTGGAAGGATGGCGCTGCAGACGACTGATTACCCCCCCTCAG
GCCCAAACGATCGCCACACTCCCAAGGCACCCGGCACATGATGACGCCGCAAAAGCCAAGAACACCAAAGCTTTCTAAGC
TGAATCAGGACGCCACCATGTACAGATTAATACGCAATTTTCCCTTTTATTTTACATTACGCATCGATCGATTAACGGAC
AGCTAGTAGTAAGAGTGGCAAATCAATTTGTAAATTTTTGTATCTGTGGGAGTAGTATTTTCATAATTGTTGTTGCCCAT
GATCAGAGGTGATCGTTTTGCTGCGTTTGAAGATTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12208.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis