Browse Element(s) Details


Os.41109.1.S1_at

Description gb:AK120260.1
DB_XREF= gi:37989883
TID=Os.41109.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.41109 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0519E12.4 (P0519E12.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013046F21, full insert sequence.
FL= gb:AK120260.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4374011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43690OsAffx.28889.1.S1_at11/117+26147326..26150405hypothetical protein
LOC_Os07g43700Os.17814.2.S1_x_at11/117+26152130..26154311Malate dehydrogenase, glyoxysomal precursor, putative, expressed
LOC_Os07g43700OsAffx.30978.1.S1_at1/117+26152130..26154311Malate dehydrogenase, glyoxysomal precursor, putative, expressed
LOC_Os07g43710Os.8080.2.S1_x_at11/117+26156655..26161837glycosyltransferase 5, putative, expressed
LOC_Os07g43710Os.8080.1.S1_at11/117+26156655..26161837glycosyltransferase 5, putative, expressed
LOC_Os07g43720Os.52378.1.S1_at11/117+26162000..26166374expressed protein
LOC_Os07g43730OsAffx.16702.1.S1_at11/117+26168256..26170858expressed protein
LOC_Os07g43730Os.10158.1.S1_at10/117+26168256..26170858expressed protein
LOC_Os07g43740Os.41109.1.S1_x_at11/117+26171900..26172686Zinc finger, C3HC4 type family protein, expressed
LOC_Os07g43740Os.41109.1.S1_at11/117+26171900..26172686Zinc finger, C3HC4 type family protein, expressed
LOC_Os07g43750NANA7+26174883..26180507retrotransposon protein, putative, unclassified
LOC_Os07g43760Os.28943.1.S1_x_at2/117+26181136..26184015retrotransposon protein, putative, unclassified
LOC_Os07g43770Os.12208.1.S1_at11/117+26186433..26188309expressed protein
LOC_Os07g43770OsAffx.5627.1.S1_at11/117+26186433..26188309expressed protein
LOC_Os07g43780OsAffx.22848.4.S1_at3/117+26196214..26197718retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g43780OsAffx.22848.4.S1_x_at2/117+26196214..26197718retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41109.1.S1_at--373--5511Chr07:26172378..26172402 (25 bp)
GAACAACAACCACCAGAGGAGCAGC
LOC_Os07g43740
Os.41109.1.S1_at--805--2211Chr07:26172383..26172407 (25 bp)
ACAACCACCAGAGGAGCAGCAGAGC
LOC_Os07g43740
Os.41109.1.S1_at--616--3971Chr07:26172445..26172469 (25 bp)
CGGTGGTGGTGAGCTACGTGGTGCT
LOC_Os07g43740
Os.41109.1.S1_at--686--7631Chr07:26172499..26172523 (25 bp)
GGGAGCCATGGAACATTAGGATAGA
LOC_Os07g43740
Os.41109.1.S1_at--584--3591Chr07:26172512..26172536 (25 bp)
CATTAGGATAGAGGACGTGGATTAG
LOC_Os07g43740
Os.41109.1.S1_at--1087--8091Chr07:26172524..26172548 (25 bp)
GGACGTGGATTAGGACCAGGATTAT
LOC_Os07g43740
Os.41109.1.S1_at--191--10451Chr07:26172533..26172557 (25 bp)
TTAGGACCAGGATTATATTCTTCAA
LOC_Os07g43740
Os.41109.1.S1_at--156--8091Chr07:26172536..26172560 (25 bp)
GGACCAGGATTATATTCTTCAAATT
LOC_Os07g43740
Os.41109.1.S1_at--606--3471Chr07:26172540..26172564 (25 bp)
CAGGATTATATTCTTCAAATTGGTT
LOC_Os07g43740
Os.41109.1.S1_at--609--10572Chr07:26172591..26172615 (25 bp)
TTCTTTCGGTTTTTGTATATACACT
LOC_Os07g43740
Os.41109.1.S1_at--236--6891Chr07:26172605..26172629 (25 bp)
GTATATACACTACTAGCTGCGAGGG
LOC_Os07g43740
Target Sequence 
GAACAACAACCACCAGAGGAGCAGCAGAGCGGCGGCGCGGACGCCGGCGAGAGGCGGAGGCCGAGGGCGGTGGTGGTGAG
CTACGTGGTGCTCGGAGACGGCGGCCGCGGCGGGGAGAGAGGGGAGCCATGGAACATTAGGATAGAGGACGTGGATTAGG
ACCAGGATTATATTCTTCAAATTGGTTTCAATTGGTTTTAAGGTGGTCGATTTTTCTTTCGGTTTTTGTATATACACTAC
TAGCTGCGAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41109.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis