Browse Element(s) Details


Os.17814.2.S1_x_at

Description gb:AK068064.1
DB_XREF= gi:32978082
TID=Os.17814.2
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.17814 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative malate dehydrogenase (P0011H09.34), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013130E16, full insert sequence.
FL= gb:AK068064.1 gb:AK059570.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4370011/11Malate dehydrogenase, glyoxysomal precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43650OsAffx.18275.1.S1_x_at1/117+26131508..26134601retrotransposon protein, putative, unclassified
LOC_Os07g43650Os.55450.1.S1_x_at1/117+26131508..26134601retrotransposon protein, putative, unclassified
LOC_Os07g43660NANA7+26136365..26138666hypothetical protein
LOC_Os07g43670Os.6651.1.S1_at11/117+26139774..26141226Ribonuclease T2 family protein, expressed
LOC_Os07g43690OsAffx.28889.1.S1_at11/117+26147326..26150405hypothetical protein
LOC_Os07g43700Os.17814.2.S1_x_at11/117+26152130..26154311Malate dehydrogenase, glyoxysomal precursor, putative, expressed
LOC_Os07g43700OsAffx.30978.1.S1_at1/117+26152130..26154311Malate dehydrogenase, glyoxysomal precursor, putative, expressed
LOC_Os07g43710Os.8080.2.S1_x_at11/117+26156655..26161837glycosyltransferase 5, putative, expressed
LOC_Os07g43710Os.8080.1.S1_at11/117+26156655..26161837glycosyltransferase 5, putative, expressed
LOC_Os07g43720Os.52378.1.S1_at11/117+26162000..26166374expressed protein
LOC_Os07g43730OsAffx.16702.1.S1_at11/117+26168256..26170858expressed protein
LOC_Os07g43730Os.10158.1.S1_at10/117+26168256..26170858expressed protein
LOC_Os07g43740Os.41109.1.S1_x_at11/117+26171900..26172686Zinc finger, C3HC4 type family protein, expressed
LOC_Os07g43740Os.41109.1.S1_at11/117+26171900..26172686Zinc finger, C3HC4 type family protein, expressed
LOC_Os07g43750NANA7+26174883..26180507retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0042579cellular_componentmicrobody
GO:0016615molecular_functionmalate dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17814.2.S1_x_at--590--1872Chr01:26318665..26318687 (22 bp)
ACGAGTGCTCGTACGTGCAGTGCCA
NONE
Os.17814.2.S1_x_at--799--10751Chr07:26152410..26152434 (25 bp)
TTGACATACTTTTCGCAGCATTTTG
LOC_Os07g43700
Os.17814.2.S1_x_at--579--5051Chr07:26152396..26152420 (25 bp)
GCAGCATTTTGCGAGTGATTACCAT
LOC_Os07g43700
Os.17814.2.S1_x_at--773--5251Chr07:26152366..26152390 (25 bp)
GAATGCATTTCCGTGCCAATTTTGC
LOC_Os07g43700
Os.17814.2.S1_x_at--380--4391Chr07:26152352..26152376 (25 bp)
GCCAATTTTGCAGTGGTGCTCCATT
LOC_Os07g43700
Os.17814.2.S1_x_at--284--7311Chr07:26152337..26152361 (25 bp)
GTGCTCCATTAGTGATGACCGACAA
LOC_Os07g43700
Os.17814.2.S1_x_at--886--6011Chr07:26152301..26152325 (25 bp)
GAGAGTATGACTGGTGGACCCCATC
LOC_Os07g43700
Os.17814.2.S1_x_at--687--7692Chr06:28513118..28513279 (25 bp)
GGTGGACCCCATCATTTTTTATTCA
NONE
Os.17814.2.S1_x_at--223--6591Chr07:26152250..26152274 (25 bp)
GATTGCCACACGTACGCTACGTAGG
LOC_Os07g43700
Os.17814.2.S1_x_at--446--4014Chr09:13005872..13005893 (22 bp)
CGCTACGTAGGACAAAACTGCTTTA
NONE
Os.17814.2.S1_x_at--809--10431Chr07:26152172..26152196 (25 bp)
TTAGGGCGAACAATGTCTGGTTTTC
LOC_Os07g43700
Target Sequence 
ACGAGTGCTCGTACGTGCAGTGCCAGGCGGTGCCGGAGCTGCCGTTCTTCGCGTGCCGGGTGAAGCTGGGCAGGGACGGC
GTCGAGGAGGTGGCGGCGGCGGGGGCGGAGCTCCGGGGGCTCACGGAGTTCGAGGCGCGCGCGCTGGAGGCGCTCAAGCC
GCAGCTCAAGAAGAGCATCGACAAGGGCGTCGCCTACGCGCAGCAGCAGCCAGCGACGGTGGCGATGGGTTGAAATTTGA
CATACTTTTCGCAGCATTTTGCGAGTGATTACCATTTGCTGAATGCATTTCCGTGCCAATTTTGCAGTGGTGCTCCATTA
GTGATGACCGACAAAAGAGAGATGAGAGAGTATGACTGGTGGACCCCATCATTTTTTATTCAAAAAATGCTGACTGGATT
GCCACACGTACGCTACGTAGGACAAAACTGCTTTAGATTGGNTCGAGGGGGGTAAATCGTCTAGAATTGAAAGTTTAGGG
CGAACAATGTCTGGTTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17814.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis