Browse Element(s) Details


Os.6651.1.S1_at

Description gb:AK060320.1
DB_XREF= gi:32970338
TID=Os.6651.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.6651 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative aleurone ribonuclease (P0011H09.30), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-007-F07, full insert sequence.
FL= gb:AK104512.1 gb:AK060320.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4367011/11Ribonuclease T2 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43630Os.45173.1.S1_x_at1/117+26114122..26120070retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g43630OsAffx.20257.1.S1_at1/117+26114122..26120070retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g43630Os.47130.4.A1_x_at1/117+26114122..26120070retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g43640OsAffx.28965.1.S1_at11/117+26124155..26126609Ribonuclease T2 family protein
LOC_Os07g43650OsAffx.18275.1.S1_x_at1/117+26131508..26134601retrotransposon protein, putative, unclassified
LOC_Os07g43650Os.55450.1.S1_x_at1/117+26131508..26134601retrotransposon protein, putative, unclassified
LOC_Os07g43660NANA7+26136365..26138666hypothetical protein
LOC_Os07g43670Os.6651.1.S1_at11/117+26139774..26141226Ribonuclease T2 family protein, expressed
LOC_Os07g43690OsAffx.28889.1.S1_at11/117+26147326..26150405hypothetical protein
LOC_Os07g43700Os.17814.2.S1_x_at11/117+26152130..26154311Malate dehydrogenase, glyoxysomal precursor, putative, expressed
LOC_Os07g43700OsAffx.30978.1.S1_at1/117+26152130..26154311Malate dehydrogenase, glyoxysomal precursor, putative, expressed
LOC_Os07g43710Os.8080.2.S1_x_at11/117+26156655..26161837glycosyltransferase 5, putative, expressed
LOC_Os07g43710Os.8080.1.S1_at11/117+26156655..26161837glycosyltransferase 5, putative, expressed
LOC_Os07g43720Os.52378.1.S1_at11/117+26162000..26166374expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007568biological_processaging
GO:0009611biological_processresponse to wounding
GO:0009718biological_processanthocyanin biosynthesis
GO:0016036biological_processcellular response to phosphate starvation
GO:0005576cellular_componentextracellular region
GO:0005622cellular_componentintracellular
GO:0004521molecular_functionendoribonuclease activity
GO:0004540molecular_functionribonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6651.1.S1_at--648--4611Chr07:26140840..26140864 (25 bp)
GCGAGACGCAGCTGTTCCAGGTGTA
LOC_Os07g43670
Os.6651.1.S1_at--495--6691Chr07:26140853..26140877 (25 bp)
GTTCCAGGTGTACCAGTGCGTCGAC
LOC_Os07g43670
Os.6651.1.S1_at--22--2531Chr07:26140906..26140930 (25 bp)
AACTCCCGATGCAGGGCAAGTGCCG
LOC_Os07g43670
Os.6651.1.S1_at--521--2691Chr07:26140941..26140965 (25 bp)
AAGCTGCCCACGTTCTAGCTAGCTA
LOC_Os07g43670
Os.6651.1.S1_at--337--771Chr07:26141044..26141068 (25 bp)
ATGTCTGATGGATGTCACGTGCGTT
LOC_Os07g43670
Os.6651.1.S1_at--1110--7091Chr07:26141057..26141081 (25 bp)
GTCACGTGCGTTTGCGTTGTTGCGT
LOC_Os07g43670
Os.6651.1.S1_at--857--10691Chr07:26141076..26141100 (25 bp)
TTGCGTGGTGCGGTTTTCAGATTAC
LOC_Os07g43670
Os.6651.1.S1_at--533--6011Chr07:26141101..26141125 (25 bp)
GAGAGATTCGAGGATTTGTCCAGTT
LOC_Os07g43670
Os.6651.1.S1_at--721--7271Chr07:26141118..26141142 (25 bp)
GTCCAGTTGGATTGCTACATGTGTA
LOC_Os07g43670
Os.6651.1.S1_at--809--6991Chr07:26141140..26141164 (25 bp)
GTACGTTACATTTGGCACTATCTGC
LOC_Os07g43670
Os.6651.1.S1_at--729--5111Chr07:26141154..26141178 (25 bp)
GCACTATCTGCTGACTTGCTGAACA
LOC_Os07g43670
Target Sequence 
GCGAGACGCAGCTGTTCCAGGTGTACCAGTGCGTCGACCGCTCCGGGAAGAAGCTCGTCGACTGCCAACTCCCGATGCAG
GGCAAGTGCCGCGACAAGGTCAAGCTGCCCACGTTCTAGCTAGCTAGCTCCCCCGTCGCCATCGTCGCCGGCGAGAGCTC
GCCGTCGCCGGCATGGCGGCGCGCCGGCGGCTGGCTGGTCTTGGATGTCTGATGGATGTCACGTGCGTTTGCGTTGTTGC
GTGGTGCGGTTTTCAGATTACGAGAGATTCGAGGATTTGTCCAGTTGGATTGCTACATGTGTACGTTACATTTGGCACTA
TCTGCTGACTTGCTGAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6651.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis