Browse Element(s) Details


OsAffx.28965.1.S1_at

Description tigr:9635.m05014
TID=OsAffx.28965.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Ribonuclease T2 family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4364011/11Ribonuclease T2 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43610OsAffx.21304.1.S1_at10/117+26104575..26107569hypothetical protein
LOC_Os07g43610Os.55580.1.S1_at1/117+26104575..26107569hypothetical protein
LOC_Os07g43630Os.45173.1.S1_x_at1/117+26114122..26120070retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g43630OsAffx.20257.1.S1_at1/117+26114122..26120070retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g43630Os.47130.4.A1_x_at1/117+26114122..26120070retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g43640OsAffx.28965.1.S1_at11/117+26124155..26126609Ribonuclease T2 family protein
LOC_Os07g43650OsAffx.18275.1.S1_x_at1/117+26131508..26134601retrotransposon protein, putative, unclassified
LOC_Os07g43650Os.55450.1.S1_x_at1/117+26131508..26134601retrotransposon protein, putative, unclassified
LOC_Os07g43660NANA7+26136365..26138666hypothetical protein
LOC_Os07g43670Os.6651.1.S1_at11/117+26139774..26141226Ribonuclease T2 family protein, expressed
LOC_Os07g43690OsAffx.28889.1.S1_at11/117+26147326..26150405hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007568biological_processaging
GO:0009611biological_processresponse to wounding
GO:0009718biological_processanthocyanin biosynthesis
GO:0016036biological_processcellular response to phosphate starvation
GO:0005576cellular_componentextracellular region
GO:0005622cellular_componentintracellular
GO:0004521molecular_functionendoribonuclease activity
GO:0004540molecular_functionribonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28965.1.S1_at--859--2291Chr07:26126041..26126065 (25 bp)
AAATGTGGCTGGAGGACTGCAACAA
LOC_Os07g43640
OsAffx.28965.1.S1_at--391--5731Chr07:26126055..26126079 (25 bp)
GACTGCAACAAGGAAGACCCGCTCG
LOC_Os07g43640
OsAffx.28965.1.S1_at--365--2711Chr07:26126106..26126130 (25 bp)
AAGCAGCTCGACCAGAAATGGCCGT
LOC_Os07g43640
OsAffx.28965.1.S1_at--1053--2951Chr07:26126122..26126146 (25 bp)
AATGGCCGTCGCTGAAACAGACCAA
LOC_Os07g43640
OsAffx.28965.1.S1_at--985--8971Chr07:26126293..26126317 (25 bp)
TGAAGACCTACACGTTCCGCGAGAT
LOC_Os07g43640
OsAffx.28965.1.S1_at--898--7671Chr07:26126343..26126367 (25 bp)
GGGTTCAGGACCTACTTCAAGTGTA
LOC_Os07g43640
OsAffx.28965.1.S1_at--859--2451Chr07:26126373..26126397 (25 bp)
AACAAGGCCGGCGATACGCTGCTGT
LOC_Os07g43640
OsAffx.28965.1.S1_at--350--5971Chr07:26126430..26126454 (25 bp)
GAGAAGCTCATCAACTGCACGGCGT
LOC_Os07g43640
OsAffx.28965.1.S1_at--886--8371Chr07:26126450..26126474 (25 bp)
GGCGTTGTCGTTTGACTACTGCGAT
LOC_Os07g43640
OsAffx.28965.1.S1_at--525--4531Chr07:26126495..26126519 (25 bp)
GCCCCAATCGGGTTATATGATCAGT
LOC_Os07g43640
OsAffx.28965.1.S1_at--867--10171Chr07:26126532..26126556 (25 bp)
TATAATCTTGCTGCCACACGATCAA
LOC_Os07g43640
Target Sequence 
AAATGTGGCTGGAGGACTGCAACAAGGAAGACCCGCTCGACCCGACGCAGATCCAGGACCTGGAGAAGCAGCTCGACCAG
AAATGGCCGTCGCTGAAACAGACCAACCTCGAGTTCTGGAGCCTCGAGTGGAAGAAGCACGGCACCTGCTCCAACCTCGG
CCAGCACGCCTACTTCGAGGCCGCGCTCGCGCTGGAGAGGCTCACCAACCTCACGAAGATCCTCGCCGACGGCGGCGTCG
GGCCGTCCGACGTGAAGACCTACACGTTCCGCGAGATCAGTGACGCCCTCGCCAGGGGCACCGGGTTCAGGACCTACTTC
AAGTGTAGCAAGAACAAGGCCGGCGATACGCTGCTGTCCGAGGTGAGGCAGTGCGTCGACCGCTACGGCGAGAAGCTCAT
CAACTGCACGGCGTTGTCGTTTGACTACTGCGATAACGCTGACAAGATCAAGATGCCCCAATCGGGTTATATGATCAGTA
GCAGCACAAGCTATAATCTTGCTGCCACACGATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28965.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis