Browse Element(s) Details


OsAffx.28889.1.S1_at

Description tigr:9635.m04381
TID=OsAffx.28889.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4369011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43640OsAffx.28965.1.S1_at11/117+26124155..26126609Ribonuclease T2 family protein
LOC_Os07g43650OsAffx.18275.1.S1_x_at1/117+26131508..26134601retrotransposon protein, putative, unclassified
LOC_Os07g43650Os.55450.1.S1_x_at1/117+26131508..26134601retrotransposon protein, putative, unclassified
LOC_Os07g43660NANA7+26136365..26138666hypothetical protein
LOC_Os07g43670Os.6651.1.S1_at11/117+26139774..26141226Ribonuclease T2 family protein, expressed
LOC_Os07g43690OsAffx.28889.1.S1_at11/117+26147326..26150405hypothetical protein
LOC_Os07g43700Os.17814.2.S1_x_at11/117+26152130..26154311Malate dehydrogenase, glyoxysomal precursor, putative, expressed
LOC_Os07g43700OsAffx.30978.1.S1_at1/117+26152130..26154311Malate dehydrogenase, glyoxysomal precursor, putative, expressed
LOC_Os07g43710Os.8080.2.S1_x_at11/117+26156655..26161837glycosyltransferase 5, putative, expressed
LOC_Os07g43710Os.8080.1.S1_at11/117+26156655..26161837glycosyltransferase 5, putative, expressed
LOC_Os07g43720Os.52378.1.S1_at11/117+26162000..26166374expressed protein
LOC_Os07g43730OsAffx.16702.1.S1_at11/117+26168256..26170858expressed protein
LOC_Os07g43730Os.10158.1.S1_at10/117+26168256..26170858expressed protein
LOC_Os07g43740Os.41109.1.S1_x_at11/117+26171900..26172686Zinc finger, C3HC4 type family protein, expressed
LOC_Os07g43740Os.41109.1.S1_at11/117+26171900..26172686Zinc finger, C3HC4 type family protein, expressed
LOC_Os07g43750NANA7+26174883..26180507retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28889.1.S1_at--57--5191Chr07:26149478..26149502 (25 bp)
GCAAGGCAGGATGTTAGCACTGACT
LOC_Os07g43690
OsAffx.28889.1.S1_at--860--8291Chr07:26149535..26149645 (25 bp)
GGCTTCTACAATTATGACTGGCGCT
LOC_Os07g43690
OsAffx.28889.1.S1_at--991--5731Chr07:26149636..26149660 (25 bp)
GACTGGCGCTCAATTGAGAGCTCAA
LOC_Os07g43690
OsAffx.28889.1.S1_at--405--2731Chr07:26149863..26149887 (25 bp)
AAGCAACCGTTCTATCATTCCTTTG
LOC_Os07g43690
OsAffx.28889.1.S1_at--602--6731Chr07:26149871..26149895 (25 bp)
GTTCTATCATTCCTTTGTGCTCTTC
LOC_Os07g43690
OsAffx.28889.1.S1_at--421--3691Chr07:26149935..26149959 (25 bp)
CTTTGGCATCTGTTCGTAGCATTCA
LOC_Os07g43690
OsAffx.28889.1.S1_at--151--491Chr07:26149942..26149966 (25 bp)
ATCTGTTCGTAGCATTCAACCGGAT
LOC_Os07g43690
OsAffx.28889.1.S1_at--712--2131Chr07:26149968..26149992 (25 bp)
ACAGTCCAAAACGTGATGTCGAGGC
LOC_Os07g43690
OsAffx.28889.1.S1_at--382--6271Chr07:26149982..26150006 (25 bp)
GATGTCGAGGCAATTAACCGCAATT
LOC_Os07g43690
OsAffx.28889.1.S1_at--896--10491Chr07:26149995..26150019 (25 bp)
TTAACCGCAATTATCAGCAGGAGAT
LOC_Os07g43690
OsAffx.28889.1.S1_at--912--5571Chr07:26150184..26150208 (25 bp)
GAAAGTGTCATCTTATGTTACCATA
LOC_Os07g43690
Target Sequence 
GCAAGGCAGGATGTTAGCACTGACTCTTCTCAAAAGAGCTAAAGATGCTATCGGGTTGGCTTCTACAATTATGACTGGCG
CTCAATTGAGAGCTCAAACGCCAAGTGAAATTTCTCTCAATACAATAGATCAGACTGTCAGGATGTATGTATCGACCTTT
GTTAAGACTGCCGAGGACACTTACCATAGGAAGGTCGATAAAGCAACCGTTCTATCATTCCTTTGTGCTCTTCAAGGTTT
GGCTGCAGTTAGCCGTATCTTGTTTGAAGATGCTTTGGCATCTGTTCGTAGCATTCAACCGGATTACAGTCCAAAACGTG
ATGTCGAGGCAATTAACCGCAATTATCAGCAGGAGATACAATGTTTGATAAATAAATTTGGGGAGGCTTCAACAACTGAA
GCACTTGAGATTCTTCATTGTACGGTTAATGATTTAGCACAGAAAGTGTCATCTTATGTTACCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28889.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis