Browse Element(s) Details


Os.12219.1.S1_at

Description gb:AK071859.1
DB_XREF= gi:32981882
TID=Os.12219.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12219 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-015-F12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023115I22, full insert sequence.
FL= gb:AK071859.1 gb:AK058594.1 gb:AK103964.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5993010/11oxidoreductase, FAD-binding family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g59870Os.13246.1.S1_at11/111+34953033..34955450Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os01g59880Os.53066.1.S1_at11/111+34959817..34962018expressed protein
LOC_Os01g59880Os.53066.1.S1_x_at11/111+34959817..34962018expressed protein
LOC_Os01g59890Os.25241.1.S1_at10/111+34963004..34966495expressed protein
LOC_Os01g59900Os.8824.1.S1_at11/111+34966593..34969643expressed protein
LOC_Os01g59910Os.27162.1.A1_at11/111+34970111..34973135F-box domain containing protein, expressed
LOC_Os01g59910Os.27162.1.A1_s_at11/111+34970111..34973135F-box domain containing protein, expressed
LOC_Os01g59910OsAffx.23861.1.S1_at11/111+34970111..34973135F-box domain containing protein, expressed
LOC_Os01g59920Os.12243.1.S1_at11/111+34973955..34977620cysteine synthase, chloroplast precursor, putative, expressed
LOC_Os01g59930Os.12219.1.S1_at10/111+34978925..34982302oxidoreductase, FAD-binding family protein, expressed
LOC_Os01g59940OsAffx.23862.1.S1_at11/111+34985578..34986219hypothetical protein
LOC_Os01g59950Os.48290.1.A1_at4/111+34990847..34991751expressed protein
LOC_Os01g59970Os.4633.1.S1_at5/111+35001691..35002854expressed protein
LOC_Os01g59980Os.13253.1.S1_at11/111+35004885..35009062Zn-finger in Ran binding protein and others containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009416biological_processresponse to light stimulus
GO:0042128biological_processnitrate assimilation
GO:0005739cellular_componentmitochondrion
GO:0005829cellular_componentcytosol
GO:0004128molecular_functioncytochrome-b5 reductase activity
GO:0008134molecular_functiontranscription factor binding
GO:0008940molecular_functionnitrate reductase activity
GO:0009703molecular_functionnitrate reductase (NADH) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12219.1.S1_at--1083--2351Chr01:34980052..34980076 (25 bp)
AAACCTACCCTGATCGCTTTAAGAT
LOC_Os01g59930
Os.12219.1.S1_at--1042--9891Chr01:34979550..34980050 (25 bp)
TACTATGTCTTGAATCAGCCTCCTG
LOC_Os01g59930
Os.12219.1.S1_at--1032--131Chr01:34979484..34979508 (25 bp)
ATTAAAGCTCATTTGCCAGCACCTG
LOC_Os01g59930
Os.12219.1.S1_at--174--1771Chr01:34979353..34979488 (25 bp)
ACCTGCCGAGGACATTCAAATCTTG
LOC_Os01g59930
Os.12219.1.S1_at--251--2271NONE
AAATCTTGAGGTGTGGTCCTCCTCC
NONE
Os.12219.1.S1_at--544--2931Chr01:34979304..34979328 (25 bp)
AAGGCAATGGCTGCGCACCTTGATG
LOC_Os01g59930
Os.12219.1.S1_at--277--1731Chr01:34979288..34979312 (25 bp)
ACCTTGATGAGCTCGGGTACACCAA
LOC_Os01g59930
Os.12219.1.S1_at--547--6331Chr01:34979260..34979284 (25 bp)
GATGCAGTTCCAGTTCTAAGCTCTC
LOC_Os01g59930
Os.12219.1.S1_at--402--10471Chr01:34979189..34979213 (25 bp)
TTACGCTCTCTTGTGTCATGGAGAC
LOC_Os01g59930
Os.12219.1.S1_at--533--9391Chr01:34979163..34979187 (25 bp)
TCGTCTGACCTCTTTTGTTAGTTGA
LOC_Os01g59930
Os.12219.1.S1_at--63--7371Chr01:34979051..34979075 (25 bp)
GTGACTGCCATCTGGTTTACAAACT
LOC_Os01g59930
Target Sequence 
AAACCTACCCTGATCGCTTTAAGATCTACTATGTCTTGAATCAGCCTCCTGAAGTCTGGAACGGTGGCGTTGGGTTTGTG
TCACAGGACATGATTAAAGCTCATTTGCCAGCACCTGCCGAGGACATTCAAATCTTGAGGTGTGGTCCTCCTCCGATGAA
CAAGGCAATGGCTGCGCACCTTGATGAGCTCGGGTACACCAAGGAGATGCAGTTCCAGTTCTAAGCTCTCCTAATGGCGG
AGTACCAGAATAATGGACCCCATGGCCTACGCTGTCTTACGCTCTCTTGTGTCATGGAGACGTCGTCTGACCTCTTTTGT
TAGTTGATAGCAATACATGATTAGTCGTGACCCAACAATTCATGTATCACTCCATTTTTATGGGCAAATGTTATCTGCAA
TTGGCAGAAGCCCTGTGACTGCCATCTGGTTTACAAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12219.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis