Browse Element(s) Details


Os.12221.1.S1_at

Description gb:U57639.1
DB_XREF= gi:4097339
TID=Os.12221.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12221 (NCBI UniGene Cluster)
UG_TITLE=Hydrophobic LEA-like protein mRNA, complete cds
DEF=Oryza sativa hydrophobic LEA-like protein mRNA, complete cds.
FL= gb:AK063592.1 gb:U57639.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2400011/11plasma membrane associated protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g23990Os.7679.1.S1_at11/117+13587797..13602928tetratricopeptide repeat, putative, expressed
LOC_Os07g23990OsAffx.4222.1.S1_at2/117+13587797..13602928tetratricopeptide repeat, putative, expressed
LOC_Os07g24000Os.12221.1.S1_at11/117+13606022..13607150plasma membrane associated protein, putative, expressed
LOC_Os07g24010NANA7+13609381..13609845hypothetical protein
LOC_Os07g24020Os.26886.3.S1_x_at4/117+13610131..13614779transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g24020OsAffx.22421.1.S1_at1/117+13610131..13614779transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g24030OsAffx.5424.1.S1_at11/117+13623190..13623438hypothetical protein
LOC_Os07g24040Os.55085.1.S1_at1/117+13626518..13633387expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12221.1.S1_at--171--1071Chr07:13606830..13606854 (25 bp)
AGGGTCTGATCGATGATCTCCCCGA
LOC_Os07g24000
Os.12221.1.S1_at--671--2131Chr07:13606913..13606937 (25 bp)
ACAGTGTGACTGTGAGGCTCTGCCT
LOC_Os07g24000
Os.12221.1.S1_at--181--8891Chr07:13606925..13606949 (25 bp)
TGAGGCTCTGCCTCTGTGTGCAGCA
LOC_Os07g24000
Os.12221.1.S1_at--291--1131Chr07:13606949..13606973 (25 bp)
AGTGCAGTGTAAGCTCTGTGCTCTC
LOC_Os07g24000
Os.12221.1.S1_at--371--8691Chr07:13606965..13606989 (25 bp)
TGTGCTCTCGCCTTTAATTACACTA
LOC_Os07g24000
Os.12221.1.S1_at--389--7471Chr07:13607034..13607058 (25 bp)
GTGTGTATGTGACCGTACCTAGTAC
LOC_Os07g24000
Os.12221.1.S1_at--180--6951Chr07:13607055..13607079 (25 bp)
GTACGTACTTTGATCGTAGTAGCTA
LOC_Os07g24000
Os.12221.1.S1_at--262--10011Chr07:13607074..13607098 (25 bp)
TAGCTAGGTGTGCACGTCATGGCCT
LOC_Os07g24000
Os.12221.1.S1_at--131--7131Chr07:13607089..13607113 (25 bp)
GTCATGGCCTGTATTTTGCTCGCAT
LOC_Os07g24000
Os.12221.1.S1_at--1110--151Chr07:13607101..13607125 (25 bp)
ATTTTGCTCGCATGGAAGTGCCGTC
LOC_Os07g24000
Os.12221.1.S1_at--652--9171Chr07:13607119..13607143 (25 bp)
TGCCGTCCTCAATTAATTACTCCTT
LOC_Os07g24000
Target Sequence 
AGGGTCTGATCGATGATCTCCCCGACACGGGGTCACGCAAGAATAAACGATAATACATACTTGATGGTCATTTTGTGTGT
GTGACAGTGTGACTGTGAGGCTCTGCCTCTGTGTGCAGCAGTGCAGTGTAAGCTCTGTGCTCTCGCCTTTAATTACACTA
CTAGTTGTTTAGCGTTGTGTGTTGGGTTTGTGTAGCTTGTACATGTGTGTATGTGACCGTACCTAGTACGTACTTTGATC
GTAGTAGCTAGGTGTGCACGTCATGGCCTGTATTTTGCTCGCATGGAAGTGCCGTCCTCAATTAATTACTCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12221.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis