Browse Element(s) Details


OsAffx.5424.1.S1_at

Description tigr:9635.m02293
TID=OsAffx.5424.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2403011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g23990Os.7679.1.S1_at11/117+13587797..13602928tetratricopeptide repeat, putative, expressed
LOC_Os07g23990OsAffx.4222.1.S1_at2/117+13587797..13602928tetratricopeptide repeat, putative, expressed
LOC_Os07g24000Os.12221.1.S1_at11/117+13606022..13607150plasma membrane associated protein, putative, expressed
LOC_Os07g24010NANA7+13609381..13609845hypothetical protein
LOC_Os07g24020Os.26886.3.S1_x_at4/117+13610131..13614779transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g24020OsAffx.22421.1.S1_at1/117+13610131..13614779transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g24030OsAffx.5424.1.S1_at11/117+13623190..13623438hypothetical protein
LOC_Os07g24040Os.55085.1.S1_at1/117+13626518..13633387expressed protein
LOC_Os07g24050OsAffx.5425.1.S1_at11/117+13636574..13640975carboxyl-terminal proteinase, putative
LOC_Os07g24060NANA7+13641882..13644420retrotransposon, putative, centromere-specific
LOC_Os07g24070Os.19099.1.S1_x_at2/117+13645876..13648016retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5424.1.S1_at--2--2451Chr07:13623228..13623252 (25 bp)
AAAATGGATTCTGCTCATCAAGGAG
LOC_Os07g24030
OsAffx.5424.1.S1_at--204--7931Chr07:13623233..13623257 (25 bp)
GGATTCTGCTCATCAAGGAGATTCA
LOC_Os07g24030
OsAffx.5424.1.S1_at--1031--2912Chr07:13623247..13623271 (25 bp)
AAGGAGATTCAGTTTTTGGCATTAA
LOC_Os07g24030
OsAffx.5424.1.S1_at--935--6552Chr07:13623252..13623276 (25 bp)
GATTCAGTTTTTGGCATTAAAGACA
LOC_Os07g24030
OsAffx.5424.1.S1_at--1108--3371Chr07:13623256..13623280 (25 bp)
CAGTTTTTGGCATTAAAGACAGAGA
LOC_Os07g24030
OsAffx.5424.1.S1_at--1028--5951Chr07:13623333..13623357 (25 bp)
GAGAAGGAGAAACGCTCATGGTATA
LOC_Os07g24030
OsAffx.5424.1.S1_at--75--1431Chr07:13623340..13623364 (25 bp)
AGAAACGCTCATGGTATAAAGACGA
LOC_Os07g24030
OsAffx.5424.1.S1_at--143--10151Chr07:13623354..13623378 (25 bp)
TATAAAGACGAGGCAGAAGCGGCGT
LOC_Os07g24030
OsAffx.5424.1.S1_at--255--5051Chr07:13623366..13623390 (25 bp)
GCAGAAGCGGCGTGGGAGGCAAACC
LOC_Os07g24030
OsAffx.5424.1.S1_at--519--8231Chr07:13623383..13623407 (25 bp)
GGCAAACCGGCCTTCAGCGAATTGG
LOC_Os07g24030
OsAffx.5424.1.S1_at--256--5111Chr07:13623384..13623408 (25 bp)
GCAAACCGGCCTTCAGCGAATTGGG
LOC_Os07g24030
Target Sequence 
AAAATGGATTCTGCTCATCAAGGAGATTCAGTTTTTGGCATTAAAGACAGAGATTGATGAGGTAGATGAAGGAATTAGTA
AAGGGGAATTAGAGGAGGCTTTGCTGAGAAGGAGAAACGCTCATGGTATAAAGACGAGGCAGAAGCGGCGTGGGAGGCAA
ACCGGCCTTCAGCGAATTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5424.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis