Browse Element(s) Details


Os.12271.1.S1_at

Description gb:AK121385.1
DB_XREF= gi:37991008
TID=Os.12271.1
CNT=27
FEA=FLmRNA
TIER=FL+Stack
STK=12
UG=Os.12271 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023127J05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023127J05, full insert sequence.
FL= gb:AK121385.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1463011/11Protease inhibitor/seed storage/LTP family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14600OsAffx.12861.2.S1_x_at11/113+7903995..7907028hAT family dimerisation domain containing protein
LOC_Os03g14600OsAffx.12861.3.S1_x_at9/113+7903995..7907028hAT family dimerisation domain containing protein
LOC_Os03g14610Os.37466.1.S1_s_at11/113+7908065..7913013TB2/DP1, HVA22 family protein, expressed
LOC_Os03g14610Os.8643.1.S1_at8/113+7908065..7913013TB2/DP1, HVA22 family protein, expressed
LOC_Os03g14620NANA3+7917543..7919012transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g14630Os.12271.1.S1_at11/113+7925521..7926233Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g14640OsAffx.3243.1.S1_at11/113+7938552..7940292expressed protein
LOC_Os03g14650NANA3+7944733..7945173hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12271.1.S1_at--967--8031Chr03:7926030..7926054 (25 bp)
GGAGTCATATCAGATCTCGCGAACT
LOC_Os03g14630
Os.12271.1.S1_at--129--9871Chr03:7926006..7926030 (25 bp)
TACACGAGGTGCATCACTGCGATAT
LOC_Os03g14630
Os.12271.1.S1_at--380--9091Chr03:7925989..7926013 (25 bp)
TGCGATATTGTTCGGACGCCCCAAT
LOC_Os03g14630
Os.12271.1.S1_at--795--7531Chr03:7925888..7925912 (25 bp)
GGGCCACCGGACTATCAATCGGTAT
LOC_Os03g14630
Os.12271.1.S1_at--213--9771Chr03:7925851..7925875 (25 bp)
TAATGTCACAGGTAGCATCCTCAAG
LOC_Os03g14630
Os.12271.1.S1_at--30--1531Chr03:7925784..7925808 (25 bp)
AGCAGAGCCTAGCTGATCGCGATCT
LOC_Os03g14630
Os.12271.1.S1_at--799--531Chr03:7925769..7925793 (25 bp)
ATCGCGATCTGGCTCTAGCTAATAA
LOC_Os03g14630
Os.12271.1.S1_at--47--4271Chr03:7925726..7925750 (25 bp)
GCGTACTCTACCCTTAAATCGTAAT
LOC_Os03g14630
Os.12271.1.S1_at--683--31Chr03:7925696..7925720 (25 bp)
ATTGTGCTGCTTGCGTAATTACTTA
LOC_Os03g14630
Os.12271.1.S1_at--844--10091Chr03:7925658..7925682 (25 bp)
TATGTACTTAATTTGGGTCCTGTGC
LOC_Os03g14630
Os.12271.1.S1_at--87--5071Chr03:7925635..7925659 (25 bp)
GCAGCTATGCTTCTAGTCGACTATA
LOC_Os03g14630
Target Sequence 
GGAGTCATATCAGATCTCGCGAACTACACGAGGTGCATCACTGCGATATTGTTCGGACGCCCCAATCCCGAGCAGTTCTG
CTGCCCGGCGATCTCGGAGCTNNNCCCCAACAACGTCGCCGCCAGATGCGTGTGCGCCGCTCTCAGGGCCACCGGACTAT
CAATCGGTATAACCGCGAGCAATAATGTCACAGGTAGCATCCTCAAGATCTNGCAACAAAGCTNCCCTGGNACCTCTTGA
CTGTCAACTGCAGCAGAGCCTAGCTGATCGCGATCTGGCTCTAGCTAATAAAGCATGCATGCACTACGCGCGTACTCTAC
CCTTAAATCGTAATTATATATTGTGCTGCTTGCGTAATTACTTATATATGTTACTCGTATGTACTTAATTTGGGTCCTGT
GCAGCTATGCTTCTAGTCGACTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12271.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis