Browse Element(s) Details


Os.37466.1.S1_s_at

Description gb:AK058393.1
DB_XREF= gi:32968411
TID=Os.37466.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.37466 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-015-A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-015-A09, full insert sequence.
FL= gb:AK058393.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1461011/11TB2/DP1, HVA22 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14570Os.12766.1.S1_at11/113+7886105..7886959expressed protein
LOC_Os03g14580Os.12336.1.S1_at11/113+7890746..7893321Rap8, putative, expressed
LOC_Os03g14590Os.27624.1.S1_at11/113+7893606..789730839 kDa EF-Hand containing protein, putative, expressed
LOC_Os03g14600OsAffx.12861.2.S1_x_at11/113+7903995..7907028hAT family dimerisation domain containing protein
LOC_Os03g14600OsAffx.12861.3.S1_x_at9/113+7903995..7907028hAT family dimerisation domain containing protein
LOC_Os03g14610Os.37466.1.S1_s_at11/113+7908065..7913013TB2/DP1, HVA22 family protein, expressed
LOC_Os03g14610Os.8643.1.S1_at8/113+7908065..7913013TB2/DP1, HVA22 family protein, expressed
LOC_Os03g14620NANA3+7917543..7919012transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g14630Os.12271.1.S1_at11/113+7925521..7926233Protease inhibitor/seed storage/LTP family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37466.1.S1_s_at--506--2471Chr03:7908634..7908658 (25 bp)
AACACCAAAATCTGATGCCGACGCA
LOC_Os03g14610
Os.37466.1.S1_s_at--76--2311Chr03:7908556..7908580 (25 bp)
AAAGGCCGATGTACCAGCATCTGAA
LOC_Os03g14610
Os.37466.1.S1_s_at--525--1531Chr03:7908541..7908565 (25 bp)
AGCATCTGAACCTAGTGCTCCACTC
LOC_Os03g14610
Os.37466.1.S1_s_at--385--5411Chr03:7908504..7908528 (25 bp)
GAAGCTGACAAGATGGCCATTGACG
LOC_Os03g14610
Os.37466.1.S1_s_at--1118--1431Chr03:7908454..7908478 (25 bp)
AGAAGAGGGTGATCCTGTTCCAGGT
LOC_Os03g14610
Os.37466.1.S1_s_at--724--831Chr03:7908408..7908432 (25 bp)
ATGGAGGAGACGATCCGTGTGACTC
LOC_Os03g14610
Os.37466.1.S1_s_at--94--3731Chr03:7908237..7908261 (25 bp)
CTAATTGATCGTTCTGTTGCCCAAG
LOC_Os03g14610
Os.37466.1.S1_s_at--196--6691Chr03:7908222..7908246 (25 bp)
GTTGCCCAAGAGTTTGTCATCTCGT
LOC_Os03g14610
Os.37466.1.S1_s_at--226--471Chr03:7908204..7908228 (25 bp)
ATCTCGTTTTCTGTGTTGCTAGCAT
LOC_Os03g14610
Os.37466.1.S1_s_at--978--8171Chr03:7908167..7908191 (25 bp)
GGAAGTTGTAAATAGCACCGTGCAT
LOC_Os03g14610
Os.37466.1.S1_s_at--940--6191Chr03:7908114..7908138 (25 bp)
GAGGAATGCCTGTATCTTGAAACAT
LOC_Os03g14610
Target Sequence 
AACACCAAAATCTGATGCCGACGCACCAAAGAAAAATGAGGCGGCGCCAGCTTCCTTGCAAGTGNCAACTCCAGCAACAA
AGGCCGATGTACCAGCATCTGAACCTAGTGCTCCACTCCCTGAAGCCGAAGAAGCTGACAAGATGGCCATTGACGAGGCT
GATGATGCCGTAGAGGGCACAGAAGAGGGTGATCCTGTTCCAGGTGAGACAGTAGAGGAGAGACCAATGGAGGAGACGAT
CCGTGTGACTCGCNCCAAGCTAAGGAGGCGTACTGCTTCTGAGGATCCTGCAGGAAATTAACAGCAATCCATTCTTTTTG
TTGCATGTTGTGCTGTTCATTTTCTTTTTAAGTTTTAGATTGTCATGTTGTTTGGTGCATGTGGGAAATGTGTTGGTCTA
ATTGATCGTTCTGTTGCCCAAGAGTTTGTCATCTCGTTTTCTGTGTTGCTAGCATGTTTGTGTGCTTGGAAGTTGTAAAT
AGCACCGTGCATGTATGTATATATCAATTGGTGGCATGGCGAGGAATGCCTGTATCTTGAAACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37466.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis