Browse Element(s) Details


Os.12766.1.S1_at

Description gb:AK120462.1
DB_XREF= gi:37990085
TID=Os.12766.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12766 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023090G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013107I18, full insert sequence.
FL= gb:AK120462.1 gb:AK121219.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1457011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14520Os.52970.1.S1_at11/113+7860293..7863387Nucleotide-sensitive chloride conductance regulator family protein, expressed
LOC_Os03g14530Os.9027.1.S1_at11/113+7863868..786584540S ribosomal protein S20, putative, expressed
LOC_Os03g14540Os.39979.1.A1_at11/113+7868377..7870396NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os03g14550OsAffx.3242.1.S1_at10/113+7874298..7874936GAST1 protein precursor, putative
LOC_Os03g14560OsAffx.12860.1.S1_at11/113+7875991..7880726Cytochrome P450 family protein
LOC_Os03g14560Os.46470.2.S1_x_at1/113+7875991..7880726Cytochrome P450 family protein
LOC_Os03g14570Os.12766.1.S1_at11/113+7886105..7886959expressed protein
LOC_Os03g14580Os.12336.1.S1_at11/113+7890746..7893321Rap8, putative, expressed
LOC_Os03g14590Os.27624.1.S1_at11/113+7893606..789730839 kDa EF-Hand containing protein, putative, expressed
LOC_Os03g14600OsAffx.12861.2.S1_x_at11/113+7903995..7907028hAT family dimerisation domain containing protein
LOC_Os03g14600OsAffx.12861.3.S1_x_at9/113+7903995..7907028hAT family dimerisation domain containing protein
LOC_Os03g14610Os.37466.1.S1_s_at11/113+7908065..7913013TB2/DP1, HVA22 family protein, expressed
LOC_Os03g14610Os.8643.1.S1_at8/113+7908065..7913013TB2/DP1, HVA22 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12766.1.S1_at--433--3631Chr03:7886565..7886589 (25 bp)
CTTCACGTACGAGGACTTCATGGAG
LOC_Os03g14570
Os.12766.1.S1_at--1125--8111Chr03:7886310..7886334 (25 bp)
GGACATGTGGAAGCCCTGATCATTG
LOC_Os03g14570
Os.12766.1.S1_at--50--431Chr03:7886292..7886316 (25 bp)
ATCATTGATTCTACTGCTACTCGTC
LOC_Os03g14570
Os.12766.1.S1_at--397--9911Chr03:7886275..7886299 (25 bp)
TACTCGTCGTCTTTGATATCCGCAC
LOC_Os03g14570
Os.12766.1.S1_at--684--251Chr03:7886260..7886284 (25 bp)
ATATCCGCACGCCTATTATGCGTAC
LOC_Os03g14570
Os.12766.1.S1_at--17--10191Chr03:7886224..7886248 (25 bp)
TATACGCTGCTTGATTTGCTTGCCG
LOC_Os03g14570
Os.12766.1.S1_at--914--10711Chr03:7886209..7886233 (25 bp)
TTGCTTGCCGGTTAGTAACTAGCTA
LOC_Os03g14570
Os.12766.1.S1_at--971--4971Chr03:7886179..7886203 (25 bp)
GCATCTGTACATATACCGAGCTTGA
LOC_Os03g14570
Os.12766.1.S1_at--38--5991Chr03:7886156..7886180 (25 bp)
GAGACTGTTAACTCTTGTTTTGTAA
LOC_Os03g14570
Os.12766.1.S1_at--154--4651Chr03:7886126..7886150 (25 bp)
GCGTCTGGTTTTTGTTCGGGATCGA
LOC_Os03g14570
Os.12766.1.S1_at--658--7971Chr03:7886108..7886132 (25 bp)
GGATCGAGTTTGTTTTCTCTGTTCA
LOC_Os03g14570
Target Sequence 
CTTCACGTACGAGGACTTCATGGAGGAGGCGGCGGAGCAGCTCAGCTGGGCGCTGCTGCTCGTCCCCGTCGCGCTCGTCC
TCCTCATCCGCTGGATCTCCTCCGTCGACACCTTCGACGGCTACTTCAGCTTCTACCCAACCGAGCGCCGCTGGAACCGC
TACGACCCGGGCCCCGCCGAGGGGAGCTCCCCATGGGGCGTCGCCATGGTCGTCCTGCTCCTCCTCGTCCTCGCCTCCTT
CCACTCCACCTTCCAGGACATGTGGAAGCCCTGATCATTGATTCTACTGCTACTCGTCGTCTTTGATATCCGCACGCCTA
TTATGCGTACGTACGTGGGGTTATACGCTGCTTGATTTGCTTGCCGGTTAGTAACTAGCTAGTTATGCATCTGTACATAT
ACCGAGCTTGAGACTGTTAACTCTTGTTTTGTAATTAACGCGTCTGGTTTTTGTTCGGGATCGAGTTTGTTTTCTCTGTT
CA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12766.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis